Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p24560 Brassica napus HOM05D000916 ORTHO05D011795 1.5e-68 262.7 133 100.0
BolC3t19869H Brassica oleracea HOM05D000916 ORTHO05D011795 9.4e-58 226.9 180 70.0
BcaC01g00131 Brassica carinata HOM05D000916 ORTHO05D011795 8.8e-32 140.6 76 97.4
BcaB08g36567 Brassica carinata HOM05D000916 ORTHO05D008653 5.7e-31 137.9 163 53.4
BcaC04g19381 Brassica carinata HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
A03p66130 Brassica napus HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
A10p19910 Brassica napus HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
C09p56310 Brassica napus HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
BolC9t58500H Brassica oleracea HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
BraA03t15665Z Brassica rapa HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
BraA10t44066Z Brassica rapa HOM05D000916 ORTHO05D008653 2.2e-30 136.0 163 52.8
Thhalv10013775m.g Eutrema salsugineum HOM05D000916 ORTHO05D008653 2.9e-27 125.6 164 50.0
Sp6g24550 Schrenkiella parvula HOM05D000916 ORTHO05D008653 3.8e-27 125.2 163 48.5
AT5G19850 Arabidopsis thaliana HOM05D000916 ORTHO05D008653 1.4e-24 116.7 151 49.0
Carub.0006s1820 Capsella rubella HOM05D000916 ORTHO05D008653 3.0e-24 115.5 151 48.3
CARHR193030 Cardamine hirsuta HOM05D000916 ORTHO05D008653 5.2e-24 114.8 151 48.3
AL6G31370 Arabidopsis lyrata HOM05D000916 ORTHO05D008653 3.4e-23 112.1 151 47.7
Aa31LG9G12530 Aethionema arabicum HOM05D000916 ORTHO05D008653 7.5e-23 110.9 152 46.1
SGA_v2.0_scaffold17G08041 Striga asiatica HOM05D000916 ORTHO05D008653 3.7e-22 108.6 115 50.4
THA.LOC104811067 Tarenaya hassleriana HOM05D000916 ORTHO05D008653 8.3e-22 107.5 156 43.6
Hma1.2p1_0843F.1_g227380 Hydrangea macrophylla HOM05D000916 ORTHO05D008653 1.1e-21 107.1 117 50.4
Haze_22951 Corylus avellana HOM05D000916 ORTHO05D008653 1.4e-21 106.7 110 51.8
Duzib168G0456 Durio zibethinus HOM05D000916 ORTHO05D008653 3.1e-21 105.5 163 41.1
Thecc.09G208000 Theobroma cacao HOM05D000916 ORTHO05D008653 5.4e-21 104.8 163 41.7
COL.COLO4_35043 Corchorus olitorius HOM05D000916 ORTHO05D008653 7.0e-21 104.4 154 42.9
Actinidia30433 Actinidia chinensis HOM05D000916 ORTHO05D008653 1.6e-20 103.2 162 39.5
CANSAT54G1745 Cannabis sativa HOM05D000916 ORTHO05D008653 2.0e-20 102.8 157 40.8
Gorai.013G244300 Gossypium raimondii HOM05D000916 ORTHO05D008653 2.7e-20 102.4 154 42.9
Gohir.A13G210000 Gossypium hirsutum HOM05D000916 ORTHO05D008653 3.5e-20 102.1 154 42.9
Rhsim01G0184600 Rhododendron simsii HOM05D000916 ORTHO05D008653 3.5e-20 102.1 159 40.3
Hund21633 Selenicereus undatus HOM05D000916 ORTHO05D008653 3.5e-20 102.1 159 40.3
CSS0001504 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 1.0e-19 100.5 159 39.6
Prupe.6G143300 Prunus persica HOM05D000916 ORTHO05D008653 1.3e-19 100.1 159 39.6
CSS0014256 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 2.3e-19 99.4 157 40.1
Medtr5g056200 Medicago truncatula HOM05D000916 ORTHO05D008653 2.3e-19 99.4 162 39.5
Nitab4.5_0000978g0180 Nicotiana tabacum HOM05D000916 ORTHO05D008653 2.3e-19 99.4 152 41.4
ECA248G2975 Erigeron canadensis HOM05D000916 ORTHO05D008653 3.8e-19 98.6 152 40.1
Prupe.6G005000 Prunus persica HOM05D000916 ORTHO05D008653 5.0e-19 98.2 159 39.0
FvH4_3g45410 Fragaria vesca HOM05D000916 ORTHO05D008653 6.6e-19 97.8 159 39.0
FAN11G2367 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.6e-19 97.8 159 39.0
FAN16G2348 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.6e-19 97.8 159 39.0
FAN21G1400 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.6e-19 97.8 159 39.0
FAN25G1294 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.6e-19 97.8 159 39.0
Nitab4.5_0004758g0020 Nicotiana tabacum HOM05D000916 ORTHO05D008653 6.6e-19 97.8 152 40.8
Cc03_g10030 Coffea canephora HOM05D000916 ORTHO05D008653 8.6e-19 97.4 152 41.4
Eucgr.B03607 Eucalyptus grandis HOM05D000916 ORTHO05D008653 8.6e-19 97.4 157 40.1
Cfa009571 Carpinus fangiana HOM05D000916 ORTHO05D008653 1.1e-18 97.1 163 37.4
HanXRQChr11g0344701 Helianthus annuus HOM05D000916 ORTHO05D008653 1.1e-18 97.1 152 40.1
Lj1A524T16 Lonicera japonica HOM05D000916 ORTHO05D008653 1.1e-18 97.1 159 39.6
MD11G1007800 Malus domestica HOM05D000916 ORTHO05D008653 1.1e-18 97.1 152 40.1
Peaxi162Scf00378g00518 Petunia axillaris HOM05D000916 ORTHO05D008653 1.1e-18 97.1 142 42.3
RcHm_v2.0_Chr5g0083221 Rosa chinensis HOM05D000916 ORTHO05D008653 1.5e-18 96.7 159 38.4
Glyma.18G000300 Glycine max HOM05D000916 ORTHO05D008653 1.9e-18 96.3 157 39.5
GSVIVG01025450001 Vitis vinifera HOM05D000916 ORTHO05D008653 1.9e-18 96.3 159 37.7
Lj2g0000465 Lotus japonicus HOM05D000916 ORTHO05D008653 2.5e-18 95.9 156 39.7
Oeu000521.1 Olea europaea HOM05D000284 ORTHO05D000805 2.5e-18 95.9 158 38.0
PGSC0003DMG402004581 Solanum tuberosum HOM05D000916 ORTHO05D008653 3.3e-18 95.5 152 40.1
CAN.G767.1 Capsicum annuum HOM05D000916 ORTHO05D008653 5.5e-18 94.7 152 39.5
Aqoxy2G00552 Aquilegia oxysepala HOM05D000916 ORTHO05D008653 7.2e-18 94.4 154 39.6
CiPaw.14G135800 Carya illinoinensis HOM05D000916 ORTHO05D008653 7.2e-18 94.4 163 37.4
Os07g0575800 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D008653 7.2e-18 94.4 152 38.8
Psat2g088040 Pisum sativum HOM05D000916 ORTHO05D008653 7.2e-18 94.4 156 38.5
TPR.G38291 Trifolium pratense HOM05D000916 ORTHO05D008653 7.2e-18 94.4 157 38.9
EL10Ac4g10376 Beta vulgaris HOM05D000916 ORTHO05D008653 9.5e-18 94.0 158 38.6
Sed0003044 Sechium edule HOM05D000916 ORTHO05D008653 9.5e-18 94.0 163 36.8
Solyc12g098660.3 Solanum lycopersicum HOM05D000916 ORTHO05D008653 9.5e-18 94.0 152 39.5
Sopen12g033410 Solanum pennellii HOM05D000916 ORTHO05D008653 9.5e-18 94.0 152 39.5
Lalb_Chr01g0009441 Lupinus albus HOM05D000916 ORTHO05D008653 1.2e-17 93.6 156 38.5
QL01p008693 Quercus lobata HOM05D000916 ORTHO05D008653 1.2e-17 93.6 157 37.6
Zm00001eb325320 Zea mays HOM05D000916 ORTHO05D008653 1.2e-17 93.6 152 39.5
AUR62000001 Chenopodium quinoa HOM05D000916 ORTHO05D008653 1.6e-17 93.2 162 37.7
ClCG02G024330 Citrullus lanatus HOM05D000916 ORTHO05D008653 1.6e-17 93.2 155 37.4
Ciclev10015550m.g Citrus clementina HOM05D000916 ORTHO05D008653 1.6e-17 93.2 152 38.8
BcaC02g08704 Brassica carinata HOM05D000916 ORTHO05D011795 2.1e-17 92.8 98 56.1
Ca_13814_v3 Cicer arietinum L. HOM05D000916 ORTHO05D008653 2.1e-17 92.8 159 37.1
Lsat_1_v5_gn_1_67460 Lactuca sativa HOM05D000916 ORTHO05D008653 2.1e-17 92.8 146 39.7
Potri.003G219700 Populus trichocarpa HOM05D000916 ORTHO05D008653 2.1e-17 92.8 163 38.0
PSO339G1413 Papaver somniferum HOM05D000916 ORTHO05D008653 2.8e-17 92.4 157 37.6
PSO384G1579 Papaver somniferum HOM05D000916 ORTHO05D008653 2.8e-17 92.4 157 37.6
TWI32G0708 Tripterygium wilfordii HOM05D000916 ORTHO05D008653 2.8e-17 92.4 163 36.8
Nn7g35884 Nelumbo nucifera HOM05D000916 ORTHO05D008653 3.6e-17 92.0 152 38.8
MELO3C014720.2 Cucumis melo HOM05D000916 ORTHO05D008653 6.1e-17 91.3 91 51.6
CsaV3_4G017470 Cucumis sativus L. HOM05D000916 ORTHO05D008653 6.1e-17 91.3 91 51.6
TAR633G1643 Trochodendron aralioides HOM05D000916 ORTHO05D008653 6.1e-17 91.3 159 38.4
Manes.15G108100 Manihot esculenta HOM05D000916 ORTHO05D008653 8.0e-17 90.9 159 36.5
BcaC04g21401 Brassica carinata HOM05D000916 ORTHO05D011795 1.0e-16 90.5 98 55.1
C04p51520 Brassica napus HOM05D000916 ORTHO05D011795 1.4e-16 90.1 105 52.4
Atru.chr3.2085 Acer truncatum HOM05D000916 ORTHO05D008653 1.8e-16 89.7 152 37.5
MBI04_g09718_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D008653 1.8e-16 89.7 160 36.2
SMO304G0056 Selaginella moellendorffii HOM05D000916 ORTHO05D008653 1.8e-16 89.7 158 36.7
VMungo1383G0463 Vigna mungo HOM05D000916 ORTHO05D008653 1.8e-16 89.7 155 36.8
Ah.04g161500 Amaranthus hybridus HOM05D001490 ORTHO05D008653 2.3e-16 89.4 158 38.6
C02p41330 Brassica napus HOM05D000916 ORTHO05D011795 2.3e-16 89.4 105 52.4
C03p57340 Brassica napus HOM05D000916 ORTHO05D011795 2.3e-16 89.4 105 52.4
BolC3t18010H Brassica oleracea HOM05D000916 ORTHO05D011795 2.3e-16 89.4 105 52.4
arahy.Tifrunner.gnm1.ann1.9H9I7P Arachis hypogaea HOM05D000916 ORTHO05D008653 3.0e-16 89.0 154 37.7
arahy.Tifrunner.gnm1.ann1.SDBE87 Arachis hypogaea HOM05D000916 ORTHO05D008653 3.0e-16 89.0 154 37.7
MSTRG.4278 Avicennia marina HOM05D000916 ORTHO05D008653 3.0e-16 89.0 157 38.2
BcaC04g21504 Brassica carinata HOM05D000916 ORTHO05D011795 3.0e-16 89.0 98 54.1
BolC9t56071H Brassica oleracea HOM05D000916 ORTHO05D011795 6.8e-16 87.8 105 51.4
CDE10G1189 Ceratophyllum demersum HOM05D000916 ORTHO05D008653 6.8e-16 87.8 160 34.4
A04p07570 Brassica napus HOM05D000916 ORTHO05D011795 8.9e-16 87.4 106 50.9
Cpa.g.sc119.56 Carica papaya HOM05D000916 ORTHO05D008653 8.9e-16 87.4 168 35.7
unitig_0.g2425 Utricularia gibba HOM05D000916 ORTHO05D008653 8.9e-16 87.4 91 53.8
Migut.G01135 Erythranthe guttata HOM05D000916 ORTHO05D008653 1.5e-15 86.7 154 37.0
Pp3c19_19860 Physcomitrium patens HOM05D000916 ORTHO05D008653 1.5e-15 86.7 152 36.8
C09p31030 Brassica napus HOM05D000916 ORTHO05D011795 2.0e-15 86.3 105 50.5
AUR62019171 Chenopodium quinoa HOM05D000916 ORTHO05D008653 2.0e-15 86.3 162 37.0
BraA04t16346Z Brassica rapa HOM05D000916 ORTHO05D024689 4.4e-15 85.1 46 95.7
SEGI_04744 Sequoiadendron giganteum HOM05D000916 ORTHO05D008653 4.4e-15 85.1 152 35.5
ATR0737G073 Amborella trichopoda HOM05D000916 ORTHO05D008653 5.7e-15 84.7 158 34.8
C07p62980 Brassica napus HOM05D000916 ORTHO05D011795 7.5e-15 84.3 105 50.5
BolC7t46709H Brassica oleracea HOM05D000916 ORTHO05D011795 7.5e-15 84.3 105 50.5
BolC9t55962H Brassica oleracea HOM05D000916 ORTHO05D011795 7.5e-15 84.3 105 49.5
SalBow2G3623 Salvia bowleyana HOM05D000916 ORTHO05D008653 7.5e-15 84.3 91 50.5
MCO05G282 Micromonas commoda HOM05D000916 ORTHO05D008653 9.8e-15 84.0 95 45.3
Sc06g0004190 Simmondsia chinensis HOM05D000916 ORTHO05D008653 1.3e-14 83.6 91 49.5
Sc06g0004240 Simmondsia chinensis HOM05D000916 ORTHO05D008653 1.3e-14 83.6 91 49.5
CBR_g44394 Chara braunii HOM05D000916 ORTHO05D008653 2.2e-14 82.8 90 48.9
HPP92_001606 Vanilla planifolia HOM05D000916 ORTHO05D008653 2.2e-14 82.8 157 35.0
Sabra03G0163600 Salix brachista HOM05D000916 ORTHO05D008653 3.7e-14 82.0 91 51.6
Gorai.013G244100 Gossypium raimondii HOM05D000916 ORTHO05D008653 1.8e-13 79.7 82 53.7
BcaC01g02997 Brassica carinata HOM05D000916 ORTHO05D011795 3.2e-13 79.0 89 55.1
C09p35340 Brassica napus HOM05D000916 ORTHO05D011795 1.2e-12 77.0 115 46.1
BolC9t56376H Brassica oleracea HOM05D000916 ORTHO05D011795 1.2e-12 77.0 115 46.1
Dinv23874 Davidia involucrata HOM05D000916 ORTHO05D008653 4.5e-12 75.1 81 49.4
Cre12.g558550 Chlamydomonas reinhardtii HOM05D000916 ORTHO05D008653 2.3e-11 72.8 153 35.9
PRCOL_00001611 Prasinoderma coloniale HOM05D000916 ORTHO05D008653 1.9e-10 69.7 94 39.4
BolC8t48497H Brassica oleracea HOM05D000916 ORTHO05D011795 2.1e-09 66.2 91 46.2
arahy.Tifrunner.gnm1.ann1.C5W65I Arachis hypogaea HOM05D000916 ORTHO05D008653 3.1e-08 62.4 112 35.7
C05p09190 Brassica napus HOM05D000916 ORTHO05D011795 4.0e-08 62.0 92 44.6
MBI02_g17150_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D024689 6.4e-06 54.7 44 61.4
C02p27510 Brassica napus HOM05D000916 ORTHO05D011795 8.3e-06 54.3 42 71.4


User provided reference genes

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