Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p23910 Brassica napus HOM05D006363 ORTHO05D007920 1.7e-38 162.2 79 100.0
BraA01t02298Z Brassica rapa HOM05D006363 ORTHO05D007920 1.7e-38 162.2 79 100.0
A03p67130 Brassica napus HOM05D006363 ORTHO05D007920 5.2e-32 140.6 79 89.9
BraA01t02765Z Brassica rapa HOM05D006363 ORTHO05D007920 5.2e-32 140.6 79 89.9
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 6.8e-32 140.2 70 95.7
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 2.6e-15 85.1 49 85.7
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 2.6e-15 85.1 49 85.7
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 4.5e-15 84.3 49 87.8
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 3.8e-14 81.3 49 81.6
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 3.8e-14 81.3 49 81.6
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 3.8e-14 81.3 49 81.6
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 3.8e-14 81.3 49 81.6
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 8.4e-14 80.1 49 79.6
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 3.0e-11 71.6 57 64.9
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 5.1e-11 70.9 50 70.0
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 4.3e-10 67.8 47 72.3
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 5.6e-10 67.4 49 69.4
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 7.4e-10 67.0 50 68.0
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 7.4e-10 67.0 50 68.0
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 7.4e-10 67.0 50 68.0
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 7.4e-10 67.0 49 67.3
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 7.4e-10 67.0 50 68.0
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 7.4e-10 67.0 50 62.0
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 9.6e-10 66.6 50 68.0
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 2.1e-09 65.5 49 67.3
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 4.8e-09 64.3 50 62.0
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 6.2e-09 63.9 48 66.7
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 6.2e-09 63.9 49 65.3
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 6.2e-09 63.9 49 65.3
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 8.1e-09 63.5 49 65.3
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 8.1e-09 63.5 48 64.6
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 8.1e-09 63.5 48 64.6
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 8.1e-09 63.5 50 62.0
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.1e-08 63.2 48 62.5
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 1.4e-08 62.8 50 62.0
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 2.4e-08 62.0 50 62.0
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 2.4e-08 62.0 47 68.1
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 3.1e-08 61.6 48 60.4
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 3.1e-08 61.6 49 65.3
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 4.0e-08 61.2 49 63.3
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 4.0e-08 61.2 50 60.0
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 6.9e-08 60.5 48 62.5
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 2.0e-07 58.9 50 56.0
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 3.4e-07 58.2 50 60.0
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 4.5e-07 57.8 50 54.0
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 9.9e-07 56.6 50 56.0
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.9e-07 56.6 50 56.0
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.9e-07 56.6 50 56.0
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.9e-07 56.6 50 56.0
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 1.3e-06 56.2 48 58.3
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 1.3e-06 56.2 48 60.4
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 2.2e-06 55.5 50 54.0
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 4.9e-06 54.3 59 47.5
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.4e-06 53.9 50 54.0


User provided reference genes

Program Settings