Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p23780 Brassica napus HOM05D030914 ORTHO05D016750 1.7e-191 672.5 344 100.0
BraA01t02287Z Brassica rapa HOM05D030914 ORTHO05D016750 1.8e-177 625.9 333 97.3
A01p41220 Brassica napus HOM05D000621 ORTHO05D000421 9.5e-70 268.1 356 49.7
BNapus_Darmor_BZH_scaffold_78p00490 Brassica napus HOM05D000621 ORTHO05D000421 9.5e-70 268.1 356 49.7
BcaB06g26207 Brassica carinata HOM05D000621 ORTHO05D016750 1.3e-63 247.7 367 47.7
A01p41110 Brassica napus HOM05D030914 ORTHO05D016750 1.4e-57 227.6 229 61.6
BNapus_Darmor_BZH_scaffold_78p00610 Brassica napus HOM05D030914 ORTHO05D016750 1.4e-57 227.6 229 61.6
BolC1t05784H Brassica oleracea HOM05D000621 ORTHO05D000421 1.4e-36 157.9 188 51.6
BolC1t05778H Brassica oleracea HOM05D000621 ORTHO05D016750 2.4e-33 147.1 127 61.4
A01p41160 Brassica napus HOM05D000621 ORTHO05D016750 7.1e-25 119.0 86 68.6
BNapus_Darmor_BZH_scaffold_78p00560 Brassica napus HOM05D000621 ORTHO05D016750 7.1e-25 119.0 86 68.6
BcaC05g29362 Brassica carinata HOM05D000621 ORTHO05D000421 5.8e-19 99.4 286 34.6
CARHR011680 Cardamine hirsuta HOM05D000621 ORTHO05D016750 2.9e-18 97.1 111 49.5
BcaB04g18122 Brassica carinata HOM05D000621 ORTHO05D000421 3.2e-17 93.6 343 27.1
BolC5t34311H Brassica oleracea HOM05D000621 ORTHO05D000421 1.2e-16 91.7 69 66.7
Thhalv10001489m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 2.1e-16 90.9 384 25.0
Carub.0004s2996 Capsella rubella HOM05D000621 ORTHO05D000421 8.7e-15 85.5 108 44.4
AT2G47230 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.1e-14 85.1 141 42.6
AL4G46780 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.5e-14 84.7 105 46.7
AL1G39190 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 6.2e-13 79.3 88 46.6
AL1G22510 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.8e-12 77.8 87 49.4
BcaB05g23880 Brassica carinata HOM05D000621 ORTHO05D000421 2.4e-12 77.4 364 27.5
Thhalv10027025m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 2.4e-12 77.4 60 63.3
Thhalv10020194m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 5.3e-12 76.3 96 40.6
AT1G11420 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 9.0e-12 75.5 384 23.7
AT2G47220 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 9.0e-12 75.5 81 53.1
CARHR142610 Cardamine hirsuta HOM05D000621 ORTHO05D000421 9.0e-12 75.5 114 42.1
AT1G03300 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.5e-11 74.7 107 38.3
Sp3g05300 Schrenkiella parvula HOM05D000621 ORTHO05D000421 2.0e-11 74.3 96 45.8
AT1G26540 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.6e-11 73.9 158 35.4
AT5G23770 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 4.5e-11 73.2 399 29.1
BolC8t48105H Brassica oleracea HOM05D000621 ORTHO05D000421 5.8e-11 72.8 81 49.4
Carub.0001s2450 Capsella rubella HOM05D000621 ORTHO05D000421 5.8e-11 72.8 95 44.2
BcaB02g08112 Brassica carinata HOM05D000621 ORTHO05D000421 7.6e-11 72.4 102 36.3
Thhalv10001344m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 7.6e-11 72.4 113 43.4
A05p41650 Brassica napus HOM05D000621 ORTHO05D000421 1.3e-10 71.6 110 40.0
BraA05t22885Z Brassica rapa HOM05D000621 ORTHO05D000421 1.3e-10 71.6 110 40.0
Aa31LG1G28530 Aethionema arabicum HOM05D000621 ORTHO05D000421 2.9e-10 70.5 286 26.6
Sp6g06690 Schrenkiella parvula HOM05D000621 ORTHO05D000421 2.9e-10 70.5 223 32.3
Aa31LG10G16240 Aethionema arabicum HOM05D000621 ORTHO05D000421 3.8e-10 70.1 92 43.5
A08p10370 Brassica napus HOM05D000621 ORTHO05D000421 3.8e-10 70.1 81 46.9
BraA08t33037Z Brassica rapa HOM05D000621 ORTHO05D000421 3.8e-10 70.1 81 46.9
BcaC05g30032 Brassica carinata HOM05D000621 ORTHO05D000421 1.1e-09 68.6 93 45.2
C08p37180 Brassica napus HOM05D000621 ORTHO05D000421 1.1e-09 68.6 97 38.1
CARHR142620 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.1e-09 68.6 130 34.6
BcaC07g40715 Brassica carinata HOM05D000621 ORTHO05D000421 1.4e-09 68.2 97 38.1
BolC8t51295H Brassica oleracea HOM05D000621 ORTHO05D000421 1.4e-09 68.2 97 38.1
BraA09t40842Z Brassica rapa HOM05D000621 ORTHO05D000421 1.4e-09 68.2 95 37.9
CARHR025430 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.4e-09 68.2 172 36.0
A04p00620 Brassica napus HOM05D000621 ORTHO05D000421 2.5e-09 67.4 95 37.9
C04p30710 Brassica napus HOM05D000621 ORTHO05D000421 2.5e-09 67.4 95 37.9
BraA04t15783Z Brassica rapa HOM05D000621 ORTHO05D000421 2.5e-09 67.4 95 37.9
BcaC02g10295 Brassica carinata HOM05D000621 ORTHO05D000421 3.2e-09 67.0 95 36.8
BolC4t24590H Brassica oleracea HOM05D000621 ORTHO05D000421 3.2e-09 67.0 95 36.8
BcaB05g23879 Brassica carinata HOM05D000621 ORTHO05D000421 7.1e-09 65.9 72 55.6
BraA02t07651Z Brassica rapa HOM05D000621 ORTHO05D000421 9.3e-09 65.5 114 39.5
A09p54300 Brassica napus HOM05D000621 ORTHO05D000421 2.7e-08 63.9 93 36.6
AL6G35050 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 4.6e-08 63.2 88 47.7
AL1G12810 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 6.0e-08 62.8 96 39.6
BcaB02g08793 Brassica carinata HOM05D000621 ORTHO05D000421 6.0e-08 62.8 87 36.8
BcaC07g42742 Brassica carinata HOM05D000621 ORTHO05D000421 6.0e-08 62.8 88 37.5
CARHR189760 Cardamine hirsuta HOM05D000621 ORTHO05D000421 6.0e-08 62.8 86 45.3
Thhalv10005813m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 6.0e-08 62.8 95 37.9
A02p26480 Brassica napus HOM05D000621 ORTHO05D000421 7.9e-08 62.4 82 51.2
BcaC05g29812 Brassica carinata HOM05D000621 ORTHO05D000421 1.0e-07 62.0 84 44.0
C05p60860 Brassica napus HOM05D000621 ORTHO05D000421 1.0e-07 62.0 84 44.0
BolC5t34743H Brassica oleracea HOM05D000621 ORTHO05D000421 1.0e-07 62.0 84 44.0
BcaB04g21331 Brassica carinata HOM05D000621 ORTHO05D000421 1.3e-07 61.6 102 35.3
BcaB04g21333 Brassica carinata HOM05D000621 ORTHO05D000421 1.3e-07 61.6 102 35.3
BcaB02g07341 Brassica carinata HOM05D000621 ORTHO05D000421 1.8e-07 61.2 88 34.1
AL5G45060 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 2.3e-07 60.8 88 38.6
AL6G35070 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 2.3e-07 60.8 100 45.0
BcaB08g35588 Brassica carinata HOM05D006890 ORTHO05D000421 3.0e-07 60.5 120 39.2
C04p00660 Brassica napus HOM05D000621 ORTHO05D000421 3.0e-07 60.5 97 40.2
Sp5g01090 Schrenkiella parvula HOM05D000621 ORTHO05D000421 3.9e-07 60.1 95 33.7
BcaC07g42745 Brassica carinata HOM05D000621 ORTHO05D000421 6.7e-07 59.3 93 36.6
BNapus_Darmor_BZH_scaffold_118p00180 Brassica napus HOM05D000621 ORTHO05D000421 6.7e-07 59.3 101 34.7
BraA01t04442Z Brassica rapa HOM05D000621 ORTHO05D000421 6.7e-07 59.3 101 34.7
BraA05t19058Z Brassica rapa HOM05D000621 ORTHO05D000421 6.7e-07 59.3 95 37.9
CANSAT64G2764 Cannabis sativa HOM05D000621 ORTHO05D000421 6.7e-07 59.3 110 37.3
Cpa.g.c31482 Carica papaya HOM05D000621 ORTHO05D000421 6.7e-07 59.3 105 37.1
BNapus_Darmor_BZH_scaffold_118p00170 Brassica napus HOM05D000621 ORTHO05D000421 8.7e-07 58.9 102 33.3
A05p00610 Brassica napus HOM05D000621 ORTHO05D000421 1.1e-06 58.5 95 36.8
Carub.0001s0241 Capsella rubella HOM05D000621 ORTHO05D000421 1.1e-06 58.5 116 37.9
Hma1.2p1_0965F.1_g242100 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 1.1e-06 58.5 133 34.6
CSS0010554 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.5e-06 58.2 115 33.0
CARHR005930 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.9e-06 57.8 233 30.0
ECA236G2303 Erigeron canadensis HOM05D000621 ORTHO05D000421 1.9e-06 57.8 210 27.6
BraA07t30242Z Brassica rapa HOM05D000621 ORTHO05D000421 2.5e-06 57.4 312 24.7
CARHR005940 Cardamine hirsuta HOM05D000621 ORTHO05D000421 2.5e-06 57.4 86 38.4
AT5G23800 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 3.3e-06 57.0 99 42.4
AT3G62300 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 4.3e-06 56.6 82 37.8
BcaC09g47891 Brassica carinata HOM05D000621 ORTHO05D000421 5.7e-06 56.2 102 32.4
BolC1t05625H Brassica oleracea HOM05D000621 ORTHO05D000421 5.7e-06 56.2 102 32.4
THA.LOC104817448 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 5.7e-06 56.2 98 32.7
BcaB06g29457 Brassica carinata HOM05D000621 ORTHO05D000421 7.4e-06 55.8 152 32.2
BcaC09g47890 Brassica carinata HOM05D000621 ORTHO05D000421 7.4e-06 55.8 93 33.3
BolC1t05627H Brassica oleracea HOM05D000621 ORTHO05D000421 7.4e-06 55.8 93 33.3


User provided reference genes

Program Settings