Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 8.5e-213 743.4 380 100.0
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.2e-211 739.6 380 99.2
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.4e-210 736.1 380 98.9
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.4e-210 736.1 380 98.9
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.0e-209 732.3 380 97.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.2e-201 706.4 380 93.4
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-197 693.0 381 92.7
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.7e-195 685.3 380 92.1
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 4.7e-195 684.5 380 91.1
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.0e-194 683.3 380 91.3
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.4e-194 682.9 380 91.1
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.7e-192 676.0 380 89.7
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.7e-176 622.9 380 82.9
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.2e-166 590.1 380 76.3
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 5.6e-140 501.5 380 63.2
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 7.3e-140 501.1 380 61.8
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.3e-139 500.4 380 61.8
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.1e-138 497.3 380 63.9
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.4e-138 496.1 380 62.1
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 4.0e-138 495.4 381 63.3
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 9.0e-138 494.2 377 63.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 9.9e-137 490.7 380 61.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 3.8e-136 488.8 378 64.3
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 4.9e-136 488.4 377 62.9
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 4.9e-136 488.4 377 63.1
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 6.4e-136 488.0 380 63.4
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 8.4e-136 487.6 377 62.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.1e-135 487.3 376 63.6
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.9e-135 486.5 379 63.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.9e-135 486.5 362 65.7
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.9e-135 486.5 377 62.6
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.6e-134 483.4 376 62.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 3.5e-134 482.3 380 61.1
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 3.5e-134 482.3 377 61.8
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 3.5e-134 482.3 377 62.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 3.5e-134 482.3 376 62.5
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 4.6e-134 481.9 380 61.8
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.0e-133 480.7 376 60.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.0e-133 480.7 377 61.5
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.8e-133 479.9 377 61.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 3.0e-133 479.2 377 62.9
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 3.0e-133 479.2 377 62.1
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 8.7e-133 477.6 376 61.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-132 477.2 376 61.7
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.5e-132 476.9 377 62.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.6e-132 474.9 376 61.4
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 9.6e-132 474.2 376 61.4
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.6e-131 473.4 376 61.2
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 2.1e-131 473.0 380 60.5
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 2.8e-131 472.6 430 56.3
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.8e-131 472.6 374 62.3
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 3.7e-131 472.2 377 62.1
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.2e-129 467.2 380 60.3
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.2e-128 463.0 386 59.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 6.4e-128 461.5 380 57.9
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 8.4e-128 461.1 377 61.0
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.9e-127 459.9 376 61.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.2e-127 459.1 378 61.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 5.5e-127 458.4 380 58.4
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 9.3e-127 457.6 379 58.6
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.2e-126 457.2 380 57.9
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.6e-126 456.8 380 57.4
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 4.6e-126 455.3 377 59.7
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.3e-125 453.8 380 57.6
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.3e-125 453.0 379 58.3
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 5.1e-125 451.8 382 57.9
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 5.1e-125 451.8 379 59.4
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.9e-124 449.9 380 57.1
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.3e-124 449.1 382 57.9
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 3.3e-124 449.1 377 58.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 9.6e-124 447.6 377 58.4
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.6e-123 446.8 374 58.8
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.8e-123 446.0 376 59.3
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.4e-122 443.0 407 56.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-121 440.7 376 58.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 3.4e-121 439.1 375 58.1
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.0e-120 437.6 376 58.0
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.9e-120 435.3 376 58.0
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.5e-119 433.0 376 57.4
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 3.2e-119 432.6 376 57.2
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 2.7e-118 429.5 367 59.1
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.3e-114 415.2 376 57.4
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 9.0e-114 414.5 428 49.8
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.9e-113 411.8 377 54.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 7.7e-113 411.4 399 53.9
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 2.7e-110 402.9 380 53.2
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.3e-109 399.8 376 54.8
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 6.7e-109 398.3 372 54.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.5e-105 387.1 380 52.9
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 7.7e-105 384.8 376 51.9
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 4.7e-102 375.6 315 58.1
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.0e-101 372.9 387 50.6
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 9.4e-95 351.3 368 48.9
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 3.1e-90 336.3 267 60.3
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 2.0e-89 333.6 377 45.1
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 5.0e-80 302.4 277 54.2
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 3.2e-79 299.7 269 54.6
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.6e-78 297.4 364 43.1
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 3.0e-77 293.1 405 42.2
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.4e-76 289.3 223 72.6
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.4e-76 289.3 223 72.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.6e-70 270.8 191 63.9
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.0e-69 268.1 369 38.8
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.3e-63 246.5 169 74.0
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 8.0e-62 241.9 264 49.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.0e-62 241.9 124 95.2
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.0e-61 241.5 140 87.9
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 2.3e-56 223.8 119 92.4
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 3.9e-56 223.0 380 42.1
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.5e-44 184.5 167 59.3
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 7.5e-44 182.2 135 65.2
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.4e-37 161.4 121 62.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.9e-27 126.3 110 56.4
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 6.4e-27 125.9 118 55.1
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 9.3e-26 122.1 110 55.5
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 4.5e-20 103.2 117 52.1
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.4e-18 96.3 353 25.5
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 2.2e-11 74.3 51 66.7
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 8.4e-11 72.4 84 50.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-10 72.0 45 73.3
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.6e-09 68.2 51 54.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.1e-09 67.8 114 40.4
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.5e-09 67.0 70 52.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.0e-09 66.2 45 71.1
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.0e-08 65.5 72 51.4
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.3e-08 65.1 53 62.3
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.0e-08 63.9 127 31.5
unitig_747.g21455 Utricularia gibba HOM05D000883 ORTHO05D002942 6.7e-08 62.8 132 30.3
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 1.9e-07 61.2 46 63.0
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.5e-07 60.8 43 62.8
VMungo1383G2682 Vigna mungo HOM05D000177 ORTHO05D002752 2.5e-07 60.8 140 30.0
TAR623G0958 Trochodendron aralioides HOM05D000883 ORTHO05D002942 4.3e-07 60.1 132 31.1
Mapoly0002s0289 Marchantia polymorpha HOM05D000177 ORTHO05D003047 5.7e-07 59.7 125 31.2
Lalb_Chr12g0209501 Lupinus albus HOM05D000177 ORTHO05D002752 7.4e-07 59.3 126 27.8
Actinidia34477 Actinidia chinensis HOM05D000883 ORTHO05D002942 9.6e-07 58.9 130 32.3
Ciclev10028816m.g Citrus clementina HOM05D000883 ORTHO05D002942 9.6e-07 58.9 123 30.1
Glyma.07G139000 Glycine max HOM05D000177 ORTHO05D002752 9.6e-07 58.9 127 29.9
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 9.6e-07 58.9 367 20.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.6e-06 58.2 53 58.5
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 1.6e-06 58.2 132 30.3
arahy.Tifrunner.gnm1.ann1.F13RX6 Arachis hypogaea HOM05D000177 ORTHO05D002752 2.8e-06 57.4 124 29.8
Manes.08G096000 Manihot esculenta HOM05D000883 ORTHO05D002942 2.8e-06 57.4 133 29.3
Potri.006G091900 Populus trichocarpa HOM05D000177 ORTHO05D002752 3.7e-06 57.0 141 27.7
AagrBONN_evm.TU.Sc2ySwM_344.2678 Anthoceros agrestis HOM05D001639 ORTHO05D003260 4.8e-06 56.6 125 31.2
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 4.8e-06 56.6 37 81.1
CsaV3_4G025520 Cucumis sativus L. HOM05D000177 ORTHO05D002752 4.8e-06 56.6 146 26.7
Potri.016G103300 Populus trichocarpa HOM05D000177 ORTHO05D002752 4.8e-06 56.6 141 27.7
Actinidia13161 Actinidia chinensis HOM05D000177 ORTHO05D002752 6.2e-06 56.2 138 26.8
FAN17G2912 Fragaria x ananassa HOM05D001367 ORTHO05D002514 6.2e-06 56.2 125 28.0
SEGI_33540 Sequoiadendron giganteum HOM05D001142 ORTHO05D004628 6.2e-06 56.2 360 22.5
arahy.Tifrunner.gnm1.ann1.JD0QI3 Arachis hypogaea HOM05D000177 ORTHO05D002752 8.2e-06 55.8 124 29.8
MELO3C003174.2 Cucumis melo HOM05D000177 ORTHO05D002752 8.2e-06 55.8 116 28.4
FAN02G3356 Fragaria x ananassa HOM05D000177 ORTHO05D002752 8.2e-06 55.8 129 29.5
Potri.010G121500 Populus trichocarpa HOM05D001367 ORTHO05D002514 8.2e-06 55.8 131 29.0


User provided reference genes

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