Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.5e-122 443.0 248 100.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.3e-121 439.9 248 99.2
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 2.3e-118 429.1 255 90.2
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.8e-115 419.5 248 94.4
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 9.4e-112 407.1 248 93.1
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 5.2e-110 401.4 312 72.1
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 3.5e-106 388.7 249 90.0
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.6e-103 379.8 248 86.7
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.5e-101 373.2 246 87.8
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 3.5e-98 362.1 278 77.3
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 3.8e-97 358.6 246 84.1
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 4.7e-95 351.7 278 75.9
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.0e-94 350.5 278 75.5
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.0e-89 334.0 244 70.1
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 2.2e-84 316.2 245 72.2
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 6.4e-84 314.7 246 72.0
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 6.0e-82 308.1 245 74.3
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.7e-81 306.6 245 68.2
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.7e-81 306.6 246 73.6
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 8.6e-81 304.3 245 68.6
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 1.1e-80 303.9 246 72.0
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 2.5e-80 302.8 246 67.9
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.5e-80 302.8 180 77.8
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.2e-79 300.4 241 68.5
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.2e-79 300.4 246 67.5
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.2e-79 300.4 244 74.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.6e-79 300.1 185 78.9
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.6e-79 300.1 178 78.7
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 2.1e-79 299.7 256 57.8
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 3.6e-79 298.9 245 71.4
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 3.6e-79 298.9 246 72.8
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 4.7e-79 298.5 241 68.5
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 6.2e-79 298.1 180 77.2
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.1e-78 297.4 178 78.1
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.4e-78 297.0 183 76.5
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 1.8e-78 296.6 243 59.7
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 2.3e-78 296.2 183 75.4
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 2.3e-78 296.2 244 68.0
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.3e-78 296.2 180 76.1
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 2.3e-78 296.2 249 71.5
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 3.1e-78 295.8 242 68.6
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.1e-78 295.8 185 73.5
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 3.1e-78 295.8 243 60.5
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.2e-77 293.9 247 70.9
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.2e-77 293.9 277 61.7
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.5e-77 293.5 178 76.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 3.4e-77 292.4 248 70.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 4.4e-77 292.0 247 69.6
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 5.8e-77 291.6 180 76.1
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 5.8e-77 291.6 243 70.0
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 7.5e-77 291.2 185 73.5
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 7.5e-77 291.2 180 76.1
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 3.7e-76 288.9 184 72.8
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 6.4e-76 288.1 179 76.5
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 6.4e-76 288.1 248 70.6
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.4e-76 288.1 248 63.7
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 8.3e-76 287.7 243 71.6
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.1e-75 287.3 184 72.3
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 1.4e-75 287.0 251 65.7
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.4e-75 287.0 178 75.8
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 3.2e-75 285.8 249 63.5
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 4.1e-75 285.4 240 69.6
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 5.4e-75 285.0 183 71.6
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 9.2e-75 284.3 185 70.8
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.3e-73 279.6 185 71.4
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 3.9e-73 278.9 216 62.5
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.1e-72 277.3 168 77.4
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.5e-72 276.9 185 70.3
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 1.5e-72 276.9 274 63.5
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.2e-71 273.9 183 71.0
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.1e-71 273.1 168 75.0
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.1e-71 273.1 299 56.2
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.8e-70 270.0 179 70.9
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 3.1e-70 269.2 183 69.4
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 5.2e-70 268.5 170 75.9
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.8e-70 268.1 169 76.3
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.5e-69 266.9 302 55.0
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 4.4e-69 265.4 175 72.0
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 6.4e-68 261.5 247 62.8
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 6.0e-66 255.0 171 71.3
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.3e-65 253.1 212 59.4
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 8.6e-65 251.1 164 73.8
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.8e-63 246.1 274 51.1
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.8e-62 243.4 145 75.2
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 3.1e-62 242.7 187 62.6
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 3.1e-62 242.7 152 74.3
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 3.4e-61 239.2 199 59.8
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 3.4e-61 239.2 200 62.5
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 5.8e-61 238.4 148 73.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 3.8e-60 235.7 188 61.2
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 4.9e-60 235.3 180 60.6
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 1.4e-59 233.8 146 73.3
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 8.7e-57 224.6 283 46.6
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 7.3e-56 221.5 248 56.5
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 5.8e-53 211.8 154 70.1
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.3e-52 210.7 255 59.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.2e-52 209.9 280 56.8
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 8.4e-52 208.0 129 76.7
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.2e-50 204.1 352 37.5
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.8e-47 192.2 131 68.7
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 1.4e-46 190.7 191 49.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.5e-45 185.7 167 56.3
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.4e-43 180.6 121 96.7
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 4.2e-43 179.1 168 70.2
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 2.7e-42 176.4 115 73.9
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.5e-37 160.6 118 61.0
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 3.2e-35 152.9 113 61.9
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 5.5e-35 152.1 98 72.4
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 3.3e-32 142.9 81 82.7
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.1e-30 137.9 88 73.9
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 3.4e-21 106.3 107 52.3
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-17 93.6 112 46.4
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 6.7e-17 92.0 163 53.4
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 5.1e-09 65.9 41 73.2
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 7.4e-08 62.0 34 82.4
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.8e-07 59.3 29 89.7
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 1.8e-06 57.4 38 68.4


User provided reference genes

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