Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1880.9 957 100.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1880.9 957 100.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1861.3 954 99.1
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1850.9 957 98.2
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1849.7 961 98.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1778.1 954 93.9
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1777.3 954 93.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1769.6 954 93.5
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1767.3 954 93.7
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1765.4 954 93.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1759.2 957 92.2
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1748.8 954 91.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1746.1 942 93.4
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1740.7 956 92.3
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1724.5 955 91.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1705.6 874 99.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1665.2 955 88.4
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1609.0 855 94.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1588.5 970 82.7
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 971 78.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 887 84.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 972 78.2
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 892 83.6
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 905 83.6
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 889 84.1
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 955 79.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 963 79.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 949 79.7
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 899 82.9
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1506.9 890 83.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 927 81.0
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1505.0 974 78.1
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 964 79.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 960 78.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 973 77.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 889 83.2
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 962 79.1
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 963 77.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 889 83.0
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 889 83.2
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 892 82.6
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 889 83.0
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 906 81.9
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 892 82.5
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 895 82.1
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 921 80.7
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 907 80.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 966 77.6
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 958 77.5
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 891 82.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 970 77.7
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.9 971 76.6
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 893 81.6
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 941 79.1
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 890 81.8
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 891 81.4
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1474.9 890 82.0
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 923 80.1
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 874 82.6
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 893 81.4
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 969 75.7
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 965 76.8
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 900 80.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 900 80.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 940 78.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 889 81.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 900 80.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 894 80.9
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 872 82.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1462.6 889 81.0
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1461.0 873 82.6
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 974 75.8
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1460.3 891 81.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1459.9 894 80.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 900 79.6
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1450.6 873 82.0
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 877 81.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 873 81.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 896 79.7
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 872 81.8
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 892 79.8
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1445.3 891 79.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1444.5 892 79.9
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 873 81.8
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 878 80.8
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 873 81.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 915 78.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 892 80.4
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1435.2 876 80.3
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1431.8 845 83.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1430.2 875 80.3
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1429.1 857 82.4
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 895 79.3
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 843 82.9
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 858 81.8
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1422.1 857 81.0
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 932 77.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 874 80.2
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 780 93.2
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 872 79.9
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1412.5 843 82.2
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 915 77.2
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 893 78.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1406.0 985 73.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1404.0 880 80.1
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1404.0 857 81.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1401.0 853 81.0
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1392.5 933 74.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1381.7 904 76.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1381.3 884 76.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 872 77.1
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1368.6 890 77.3
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1364.4 865 77.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 877 78.6
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1358.6 1061 67.4
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 870 76.2
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1352.4 931 75.0
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1340.1 882 76.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1335.9 823 79.3
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1333.5 869 76.5
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1315.4 771 83.5
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1312.4 803 80.0
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1298.5 903 73.3
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1292.3 814 80.1
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1289.2 904 72.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1263.8 882 74.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1231.5 880 73.2
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1219.9 735 81.9
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1216.8 878 71.8
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1194.1 857 68.8
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1190.6 729 80.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1164.4 874 67.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1159.8 895 65.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 7.1e-309 1063.9 629 82.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-304 1049.7 883 60.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.0e-283 978.4 580 82.2
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.7e-263 912.5 584 77.2
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 6.8e-259 897.9 910 54.4
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-214 750.7 492 77.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.8e-212 743.0 445 83.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.8e-202 708.8 504 72.6
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 8.2e-188 661.8 422 79.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.1e-183 645.6 449 73.3
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 5.7e-181 639.0 743 48.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 5.0e-177 625.9 335 94.0
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 3.7e-156 556.6 470 62.6
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 5.2e-134 483.0 295 79.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 8.9e-126 455.7 390 61.0
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-104 384.8 421 51.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-96 357.1 318 61.0
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.3e-88 330.9 216 76.4
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 6.9e-78 296.6 258 60.5
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 5.3e-62 243.8 227 59.5
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-57 228.4 216 56.5
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 2.2e-55 221.9 151 70.9
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 4.5e-45 187.6 119 74.8
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-39 168.7 85 98.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-38 164.9 268 39.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.3e-36 158.7 118 68.6
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 1.9e-35 155.6 81 96.3
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 5.9e-29 134.0 81 77.8
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.8e-29 133.7 83 75.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-24 119.8 91 64.8
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 8.3e-23 113.6 439 27.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 7.0e-22 110.5 130 50.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-20 105.5 95 60.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.6e-18 99.4 64 68.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 3.4e-16 91.7 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.1e-11 76.6 57 71.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-10 72.8 51 66.7
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-10 72.4 49 69.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.2e-10 70.9 63 60.3
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.8e-09 69.3 43 74.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.5e-08 63.9 48 64.6


User provided reference genes

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