Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 4.7e-143 511.5 326 100.0
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 4.7e-143 511.5 326 100.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 2.7e-135 485.7 326 89.9
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 7.0e-131 471.1 326 93.3
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 2.0e-125 453.0 321 88.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.1e-123 447.2 324 83.3
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 5.4e-123 444.9 324 83.3
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 1.2e-122 443.7 324 82.1
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 1.2e-122 443.7 326 82.5
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 5.5e-120 434.9 326 80.7
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 4.4e-117 425.2 298 88.6
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 4.0e-110 402.1 321 77.3
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 3.5e-106 389.0 332 75.3
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.5e-88 330.5 324 67.0
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.1e-86 324.3 329 65.3
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 6.8e-86 321.6 329 63.8
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.2e-85 320.9 332 63.6
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 2.6e-85 319.7 318 73.0
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 4.4e-85 318.9 323 67.5
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 7.6e-85 318.2 323 71.2
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 9.9e-85 317.8 332 63.3
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 1.3e-84 317.4 324 68.5
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 1.7e-84 317.0 334 64.4
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 4.9e-84 315.5 324 66.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 6.4e-84 315.1 324 66.7
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.1e-83 314.3 324 64.5
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.4e-83 313.9 331 60.4
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 1.9e-83 313.5 328 68.9
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 4.1e-83 312.4 328 68.3
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 4.1e-83 312.4 328 68.3
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 5.4e-83 312.0 324 63.3
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 7.1e-83 311.6 329 64.7
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 9.2e-83 311.2 327 62.1
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 9.2e-83 311.2 319 62.4
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 2.1e-82 310.1 322 60.9
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 2.7e-82 309.7 323 59.8
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 7.8e-82 308.1 326 62.0
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.3e-81 307.4 314 58.6
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.7e-81 307.0 319 63.6
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 2.3e-81 306.6 326 63.5
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.9e-81 305.8 326 63.5
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 5.1e-81 305.4 318 59.7
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 5.1e-81 305.4 326 63.2
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 8.7e-81 304.7 319 61.8
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.9e-80 303.5 317 67.8
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 2.5e-80 303.1 318 63.2
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 3.3e-80 302.8 328 57.0
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 3.3e-80 302.8 320 66.6
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 3.3e-80 302.8 323 61.0
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 5.6e-80 302.0 326 68.1
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 7.3e-80 301.6 332 59.6
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 7.3e-80 301.6 324 63.6
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 6.2e-79 298.5 318 61.3
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.4e-78 297.4 324 61.7
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 1.4e-78 297.4 337 58.2
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 5.2e-78 295.4 332 65.1
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 2.6e-77 293.1 324 65.7
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 5.8e-77 292.0 327 61.8
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 2.2e-76 290.0 354 52.5
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 3.8e-76 289.3 324 58.6
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 4.9e-76 288.9 323 60.1
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 8.4e-76 288.1 326 58.6
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.4e-75 287.3 327 61.5
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.9e-75 287.0 319 61.8
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.9e-75 287.0 326 59.5
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.9e-75 287.0 323 63.5
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 3.2e-75 286.2 326 61.3
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 4.2e-75 285.8 317 64.0
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 7.1e-75 285.0 170 83.5
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 2.7e-74 283.1 327 57.2
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 3.5e-74 282.7 321 54.2
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 6.0e-74 282.0 319 61.1
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 3.0e-73 279.6 316 59.8
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 5.1e-73 278.9 322 59.0
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 8.7e-73 278.1 316 64.2
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 8.7e-73 278.1 322 58.4
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 1.5e-72 277.3 318 58.8
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 7.3e-72 275.0 323 58.8
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 7.3e-72 275.0 318 58.8
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 9.6e-72 274.6 327 57.8
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 2.1e-71 273.5 319 58.6
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 3.6e-71 272.7 349 49.0
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 4.8e-71 272.3 204 77.5
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.2e-71 271.9 321 58.6
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 2.4e-70 270.0 322 58.7
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 9.0e-70 268.1 321 61.7
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 3.4e-69 266.2 321 61.7
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 4.5e-69 265.8 324 58.0
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 9.9e-69 264.6 349 48.1
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 2.2e-68 263.5 319 61.1
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 3.8e-68 262.7 330 49.7
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.6e-66 257.3 320 61.6
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 2.5e-64 250.0 327 53.2
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 6.2e-63 245.4 327 62.1
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 8.1e-63 245.0 344 43.0
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.1e-62 244.6 321 56.1
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 2.2e-60 236.9 331 48.3
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 8.4e-60 235.0 323 57.6
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 3.2e-59 233.0 313 53.7
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 9.0e-54 214.9 283 59.0
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 9.0e-46 188.3 168 56.5
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 1.4e-41 174.5 167 52.1
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.4e-41 174.5 169 62.1
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 2.2e-39 167.2 170 48.8
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.3e-39 165.6 205 43.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.1e-38 163.3 167 49.7
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.2e-37 161.4 256 39.1
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.0e-36 158.3 207 41.5
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.3e-36 157.9 167 49.1
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 4.2e-35 152.9 164 47.0
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 7.2e-35 152.1 169 48.5
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.2e-34 151.4 142 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 6.1e-34 149.1 213 67.6
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.6e-32 143.7 99 68.7
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 2.4e-30 137.1 350 43.1
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 1.5e-29 134.4 101 63.4
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.6e-29 133.7 99 64.6
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 2.1e-26 124.0 61 98.4
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 3.9e-25 119.8 76 71.1
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.8e-23 113.6 69 76.8
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 2.8e-23 113.6 74 68.9
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 3.2e-19 100.1 101 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.8e-17 94.4 170 41.8
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 5.7e-16 89.4 88 51.1
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 6.5e-12 75.9 253 42.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.2e-11 73.2 97 40.2
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.6e-10 71.2 54 63.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 2.1e-10 70.9 128 36.7
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 3.7e-07 60.1 39 69.2
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 4.8e-07 59.7 45 62.2
SGA_v2.0_scaffold44G16633 Striga asiatica HOM05D056423 ORTHO05D406573 4.8e-07 59.7 141 29.8


User provided reference genes

Program Settings