Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p21520 Brassica napus HOM05D024484 ORTHO05D024554 1.1e-71 273.1 130 100.0
BraA01t02059Z Brassica rapa HOM05D024484 ORTHO05D024554 7.0e-66 253.8 125 96.8
BolC2t09548H Brassica oleracea HOM05D024484 ORTHO05D024554 4.4e-28 128.3 81 79.0
C02p35320 Brassica napus HOM05D000005 ORTHO05D024554 8.9e-21 104.0 52 94.2
A08p17550 Brassica napus HOM05D024484 ORTHO05D024554 2.0e-20 102.8 62 82.3
C02p51300 Brassica napus HOM05D000005 ORTHO05D004260 8.4e-19 97.4 89 60.7
BolC2t11218H Brassica oleracea HOM05D000005 ORTHO05D004260 8.4e-19 97.4 89 60.7
BraA02t08357Z Brassica rapa HOM05D000005 ORTHO05D004260 1.1e-18 97.1 78 66.7
A02p33340 Brassica napus HOM05D000005 ORTHO05D004260 1.4e-18 96.7 89 60.7
C02p51350 Brassica napus HOM05D000005 ORTHO05D004260 1.4e-18 96.7 89 60.7
BcaC03g17207 Brassica carinata HOM05D000005 ORTHO05D004260 1.9e-18 96.3 97 56.7
Thhalv10005701m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 1.6e-17 93.2 83 59.0
Sp2g14240 Schrenkiella parvula HOM05D000005 ORTHO05D004260 3.5e-17 92.0 89 55.1
AT1G57850 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 7.8e-17 90.9 91 53.8
A02p33390 Brassica napus HOM05D000005 ORTHO05D004260 1.3e-16 90.1 66 68.2
BraA02t08361Z Brassica rapa HOM05D000005 ORTHO05D004260 1.3e-16 90.1 66 68.2
AL5G12940 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 2.3e-16 89.4 89 52.8
BcaB04g20175 Brassica carinata HOM05D000005 ORTHO05D004260 5.1e-16 88.2 85 54.1
C07p33790 Brassica napus HOM05D000005 ORTHO05D004260 5.1e-16 88.2 92 53.3
Carub.0005s0224 Capsella rubella HOM05D000005 ORTHO05D004260 8.7e-16 87.4 69 60.9
Carub.0002s0670 Capsella rubella HOM05D000005 ORTHO05D004260 1.5e-15 86.7 91 50.5
C07p33800 Brassica napus HOM05D000005 ORTHO05D004260 2.5e-15 85.9 66 60.6
BolC7t43893H Brassica oleracea HOM05D000005 ORTHO05D004260 2.5e-15 85.9 66 60.6
Thhalv10004936m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 2.5e-15 85.9 89 53.9
BolC7t43892H Brassica oleracea HOM05D000005 ORTHO05D004260 4.3e-15 85.1 92 52.2
Sp2g05790 Schrenkiella parvula HOM05D000005 ORTHO05D004260 5.6e-15 84.7 84 52.4
AL5G12970 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 7.3e-15 84.3 89 51.7
Carub.0005s0226 Capsella rubella HOM05D000005 ORTHO05D004260 7.3e-15 84.3 57 70.2
CARHR176420 Cardamine hirsuta HOM05D000005 ORTHO05D004260 9.6e-15 84.0 89 51.7
Thhalv10005569m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 9.6e-15 84.0 66 63.6
BraA09t37504Z Brassica rapa HOM05D000005 ORTHO05D004260 1.3e-14 83.6 89 52.8
CARHR145640 Cardamine hirsuta HOM05D000005 ORTHO05D004260 1.3e-14 83.6 83 57.8
AL2G18750 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 1.6e-14 83.2 66 59.1
C01p35550 Brassica napus HOM05D000005 ORTHO05D004260 1.6e-14 83.2 85 51.8
BolC1t03515H Brassica oleracea HOM05D000005 ORTHO05D004260 1.6e-14 83.2 85 51.8
AT2G03300 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 2.8e-14 82.4 66 59.1
Carub.0005s0225 Capsella rubella HOM05D000005 ORTHO05D004260 2.8e-14 82.4 60 66.7
Thhalv10005549m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 2.8e-14 82.4 92 50.0
A01p27980 Brassica napus HOM05D000005 ORTHO05D004260 3.6e-14 82.0 83 51.8
Carub.0005s0223 Capsella rubella HOM05D000005 ORTHO05D004260 4.8e-14 81.6 66 59.1
AT2G03030 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 6.2e-14 81.3 66 57.6
A09p24310 Brassica napus HOM05D000005 ORTHO05D004260 6.2e-14 81.3 82 54.9
AL1G20220 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 1.4e-13 80.1 95 44.2
BraA09t38026Z Brassica rapa HOM05D034071 ORTHO05D040790 1.8e-13 79.7 59 66.1
CARHR145620 Cardamine hirsuta HOM05D000005 ORTHO05D004260 1.2e-12 77.0 62 62.9
AT1G09665 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 1.5e-12 76.6 91 45.1
AT1G60320 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 4.4e-12 75.1 95 42.1
THA.LOC104820313 Tarenaya hassleriana HOM05D000005 ORTHO05D004260 1.3e-11 73.6 85 47.1
BcaC06g34005 Brassica carinata HOM05D000005 ORTHO05D004260 2.2e-11 72.8 55 65.5
Carub.0005s0229 Capsella rubella HOM05D000005 ORTHO05D004260 2.2e-11 72.8 118 40.7
AL8G20320 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 2.9e-11 72.4 94 41.5
AL8G22760 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 2.9e-11 72.4 94 41.5
A09p18830 Brassica napus HOM05D000005 ORTHO05D004260 3.8e-11 72.0 52 67.3
Aa31LG2G11180 Aethionema arabicum HOM05D000005 ORTHO05D004260 4.9e-11 71.6 62 53.2
BraA06t23846Z Brassica rapa HOM05D000005 ORTHO05D004260 8.4e-11 70.9 62 53.2
Aa31LG2G11140 Aethionema arabicum HOM05D000005 ORTHO05D004260 1.1e-10 70.5 91 40.7
A02p33370 Brassica napus HOM05D000005 ORTHO05D004260 1.1e-10 70.5 83 45.8
A06p06350 Brassica napus HOM05D000005 ORTHO05D004260 1.1e-10 70.5 62 53.2
C05p07750 Brassica napus HOM05D000005 ORTHO05D004260 1.4e-10 70.1 62 51.6
BolC5t29526H Brassica oleracea HOM05D000005 ORTHO05D004260 1.4e-10 70.1 62 51.6
Sp2g05800 Schrenkiella parvula HOM05D000005 ORTHO05D004260 3.2e-10 68.9 95 40.0
Aa31LG2G11070 Aethionema arabicum HOM05D000005 ORTHO05D004260 4.2e-10 68.6 66 48.5
BcaC07g42026 Brassica carinata HOM05D000005 ORTHO05D032052 9.3e-10 67.4 88 44.3
C08p50800 Brassica napus HOM05D000005 ORTHO05D032052 9.3e-10 67.4 88 44.3
BolC8t52608H Brassica oleracea HOM05D000005 ORTHO05D032052 9.3e-10 67.4 88 44.3
AT1G57830 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 1.2e-09 67.0 66 45.5
THA.LOC104816823 Tarenaya hassleriana HOM05D000005 ORTHO05D004260 1.2e-09 67.0 92 39.1
Carub.0005s0230 Capsella rubella HOM05D000005 ORTHO05D004260 1.6e-09 66.6 83 48.2
BraA02t08360Z Brassica rapa HOM05D014313 ORTHO05D027522 2.1e-09 66.2 62 51.6
THA.LOC104816822 Tarenaya hassleriana HOM05D000005 ORTHO05D004260 2.1e-09 66.2 85 43.5
AT1G47370 Arabidopsis thaliana HOM05D000005 ORTHO05D081445 2.7e-09 65.9 67 55.2
THA.LOC104812916 Tarenaya hassleriana HOM05D000005 ORTHO05D004260 2.7e-09 65.9 92 44.6
Aa31LG2G11190 Aethionema arabicum HOM05D002517 ORTHO05D003040 6.0e-09 64.7 57 50.9
THA.LOC104824557 Tarenaya hassleriana HOM05D000005 ORTHO05D004260 6.0e-09 64.7 82 43.9
Aa31LG2G11120 Aethionema arabicum HOM05D001286 ORTHO05D000440 7.8e-09 64.3 91 38.5
Aa31LG2G11150 Aethionema arabicum HOM05D001286 ORTHO05D000440 7.8e-09 64.3 91 38.5
BcaC09g49526 Brassica carinata HOM05D000005 ORTHO05D004260 1.0e-08 63.9 85 44.7
CARHR009640 Cardamine hirsuta HOM05D000005 ORTHO05D004260 1.0e-08 63.9 56 53.6
THA.LOC104825034 Tarenaya hassleriana HOM05D000005 ORTHO05D012471 1.7e-08 63.2 89 44.9
C03p80280 Brassica napus HOM05D000005 ORTHO05D000012 3.9e-08 62.0 66 45.5
Thhalv10024056m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 5.1e-08 61.6 66 42.4
CARHR145650 Cardamine hirsuta HOM05D000005 ORTHO05D004260 2.5e-07 59.3 68 51.5
BcaNung06446 Brassica carinata HOM05D000005 ORTHO05D000012 3.3e-07 58.9 66 43.9
Carub.0007s0407 Capsella rubella HOM05D000005 ORTHO05D000012 3.3e-07 58.9 82 39.0
Thhalv10000021m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 3.3e-07 58.9 58 48.3
BcaC06g34478 Brassica carinata HOM05D000005 ORTHO05D012152 5.6e-07 58.2 92 38.0
C09p27360 Brassica napus HOM05D000003 ORTHO05D000283 5.6e-07 58.2 93 35.5
BolC7t43337H Brassica oleracea HOM05D000005 ORTHO05D012152 5.6e-07 58.2 92 38.0
AL7G14890 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 7.3e-07 57.8 57 47.4
AL8G14440 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 9.6e-07 57.4 76 43.4
THA.LOC104812915 Tarenaya hassleriana HOM05D000005 ORTHO05D000146 1.6e-06 56.6 84 39.3
AL4G14820 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 2.1e-06 56.2 90 35.6
Aa31LG9G7780 Aethionema arabicum HOM05D000005 ORTHO05D012152 2.8e-06 55.8 89 37.1
AT5G45000 Arabidopsis thaliana HOM05D000005 ORTHO05D004260 2.8e-06 55.8 60 46.7
A09p21490 Brassica napus HOM05D000005 ORTHO05D004260 2.8e-06 55.8 89 34.8
C07p61570 Brassica napus HOM05D000005 ORTHO05D000012 2.8e-06 55.8 57 47.4
CARHR177720 Cardamine hirsuta HOM05D000005 ORTHO05D004260 2.8e-06 55.8 96 34.4
BraA08t34161Z Brassica rapa HOM05D000005 ORTHO05D030982 3.6e-06 55.5 57 45.6
BcaC03g16732 Brassica carinata HOM05D000005 ORTHO05D027573 4.8e-06 55.1 55 45.5
BolC7t46580H Brassica oleracea HOM05D000005 ORTHO05D000012 6.2e-06 54.7 57 45.6
A01p02590 Brassica napus HOM05D000005 ORTHO05D000012 8.1e-06 54.3 57 45.6
BraA01t00245Z Brassica rapa HOM05D000005 ORTHO05D000012 8.1e-06 54.3 57 45.6
THA.LOC104811349 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 8.1e-06 54.3 57 49.1


User provided reference genes

Program Settings