Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.2e-272 942.6 468 100.0
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.3e-268 928.3 468 98.3
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 3.0e-268 927.9 492 94.9
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 5.6e-267 923.7 468 97.9
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 5.6e-267 923.7 468 97.9
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 6.9e-265 916.8 468 96.6
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.3e-252 875.2 468 92.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 3.1e-249 864.8 468 90.4
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 9.4e-246 853.2 476 88.7
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 4.7e-245 850.9 476 88.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.3e-239 832.8 472 87.3
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.6e-237 825.9 477 86.0
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.8e-231 804.7 473 83.1
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.9e-207 725.3 480 73.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 5.6e-206 721.1 480 72.5
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.6e-205 718.4 480 72.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.2e-204 714.5 480 72.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 5.8e-203 711.1 479 72.7
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.2e-202 709.1 480 72.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.4e-201 706.4 480 72.3
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.0e-200 702.6 481 70.5
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.8e-200 700.7 480 70.2
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.8e-200 700.7 480 70.6
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 7.8e-200 700.7 485 71.8
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.3e-199 699.1 480 71.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.6e-199 697.2 478 71.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.6e-198 694.5 474 71.5
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.6e-197 693.0 479 69.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.6e-197 693.0 479 69.5
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.8e-197 692.2 481 69.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.8e-197 692.2 480 69.4
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.8e-197 692.2 481 69.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.7e-197 691.4 480 69.8
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.2e-197 691.0 482 69.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.8e-196 689.5 473 70.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 4.0e-196 688.3 482 69.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 5.2e-196 688.0 480 69.4
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.8e-196 687.6 475 70.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.4e-195 685.3 486 69.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.4e-195 684.9 507 66.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.8e-195 684.5 477 70.2
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.8e-195 684.5 484 69.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 5.8e-195 684.5 492 68.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.3e-194 683.3 481 69.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.9e-194 682.2 477 69.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.9e-194 682.2 479 69.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.9e-193 679.5 482 70.1
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.2e-193 678.7 481 67.8
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.2e-192 676.8 484 68.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.8e-192 674.1 483 67.7
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.0e-191 673.7 481 68.4
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 8.6e-191 670.6 473 70.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 8.6e-191 670.6 480 67.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.5e-190 669.8 481 68.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-190 669.1 484 68.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.5e-190 669.1 477 68.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.5e-190 669.1 481 68.4
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.3e-190 668.7 485 68.9
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 4.3e-190 668.3 481 68.0
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 5.6e-190 667.9 474 69.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 5.6e-190 667.9 481 68.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 7.3e-190 667.5 481 67.6
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.2e-189 666.8 482 67.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.8e-189 665.6 480 67.5
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.6e-189 665.2 486 67.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.7e-189 664.8 476 67.0
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 8.1e-189 664.1 496 66.5
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.1e-188 663.7 481 68.6
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.3e-188 662.5 480 67.5
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 3.1e-188 662.1 481 67.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 5.2e-188 661.4 481 67.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.9e-188 660.6 474 67.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.9e-188 660.6 474 68.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.2e-187 660.2 481 68.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.4e-187 658.7 475 67.6
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 4.4e-187 658.3 474 68.6
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.9e-186 655.6 474 66.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.9e-186 655.6 474 67.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 2.4e-185 652.5 474 67.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 4.1e-185 651.7 474 66.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.1e-185 651.0 508 63.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-184 650.2 516 64.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.6e-184 649.8 474 67.1
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.7e-184 649.0 494 65.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 6.0e-184 647.9 474 67.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.0e-183 645.6 488 66.2
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.1e-182 643.7 476 66.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 3.3e-182 642.1 473 66.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.3e-182 641.7 488 65.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.3e-182 641.7 428 72.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.2e-181 640.2 567 58.0
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-181 640.2 472 65.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.8e-181 639.0 474 67.7
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 6.8e-180 634.4 471 65.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 9.9e-179 630.6 470 65.3
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-178 630.2 458 68.8
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.7e-178 629.8 445 69.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.8e-178 628.6 488 64.8
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.1e-177 627.1 482 63.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.9e-177 626.3 489 64.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 3.5e-176 622.1 487 62.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.0e-175 620.5 416 70.2
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.3e-175 619.4 475 64.8
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 5.1e-175 618.2 427 69.6
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-169 600.1 512 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.0e-168 594.7 488 61.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.7e-167 593.2 428 67.3
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.6e-165 586.6 470 62.1
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.1e-165 586.3 416 68.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 3.1e-164 582.4 473 62.6
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 8.7e-159 564.3 483 60.9
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 7.4e-158 561.2 487 57.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.6e-155 552.7 475 57.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 2.9e-154 549.3 553 54.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 4.3e-150 535.4 412 65.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.2e-144 517.3 355 72.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.7e-138 496.9 414 61.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.0e-135 487.6 487 54.6
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.2e-128 464.2 480 51.2
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.2e-99 367.9 597 39.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.9e-98 363.2 253 65.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.0e-95 354.8 518 43.1
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.3e-90 337.0 249 66.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.2e-85 320.5 533 38.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.0e-83 313.9 211 75.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.7e-75 287.0 210 64.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.3e-74 283.9 183 69.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.4e-68 262.7 250 52.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.9e-66 256.5 283 53.7
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.5e-62 244.6 185 71.9
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.6e-59 234.6 183 60.1
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 7.3e-57 225.7 477 34.8
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.3e-55 219.5 251 46.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.4e-45 186.0 438 33.1
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 7.9e-43 179.1 172 54.1
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 7.4e-41 172.6 368 33.4
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.8e-40 170.6 442 28.5
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.2e-40 169.5 489 28.8
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-32 144.1 212 42.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.0e-26 125.6 170 40.6
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-19 101.3 183 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-16 92.0 132 42.4
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.6e-14 84.3 66 63.6
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 7.7e-14 82.8 66 66.7
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-13 82.4 66 66.7
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 6.1e-11 73.2 69 52.2
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.1e-10 70.1 68 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.6e-09 67.8 83 49.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-08 65.1 64 54.7
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 5.9e-06 56.6 70 44.3


User provided reference genes

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