Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p20630 Brassica napus HOM05D000814 ORTHO05D021422 5.6e-40 167.2 85 100.0
C01p25970 Brassica napus HOM05D000814 ORTHO05D005211 4.8e-39 164.1 85 97.6
BcaC09g50397 Brassica carinata HOM05D000814 ORTHO05D005211 4.0e-38 161.0 82 98.8
BraA01t01990Z Brassica rapa HOM05D000814 ORTHO05D005211 9.0e-38 159.8 81 100.0
BolC1t02542H Brassica oleracea HOM05D000814 ORTHO05D005211 2.0e-37 158.7 81 98.8
Thhalv10025212m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 1.9e-32 142.1 81 90.1
Carub.0007s2473 Capsella rubella HOM05D000814 ORTHO05D005211 9.6e-32 139.8 82 89.0
AT4G16670 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 3.1e-30 134.8 82 86.6
Sp7g15280 Schrenkiella parvula HOM05D000814 ORTHO05D005211 6.9e-30 133.7 82 81.7
BcaNung00163 Brassica carinata HOM05D000814 ORTHO05D005211 9.0e-30 133.3 79 83.5
CARHR223190 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.5e-29 132.5 83 86.7
BcaNung02854 Brassica carinata HOM05D000814 ORTHO05D005211 3.9e-25 117.9 82 78.0
Aa31LG2G12860 Aethionema arabicum HOM05D000814 ORTHO05D005211 9.0e-22 106.7 82 70.7
AL7G38060 Arabidopsis lyrata HOM05D000814 ORTHO05D021422 2.6e-21 105.1 61 86.9
THA.LOC104814471 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.0e-20 103.2 79 64.6
C07p48180 Brassica napus HOM05D000814 ORTHO05D101799 3.7e-15 84.7 44 90.9
Thecc.03G249400 Theobroma cacao HOM05D000814 ORTHO05D005211 2.0e-13 79.0 79 53.2
COL.COLO4_37152 Corchorus olitorius HOM05D000814 ORTHO05D005211 2.6e-13 78.6 79 51.9
Duzib084G0292 Durio zibethinus HOM05D000814 ORTHO05D005211 2.6e-13 78.6 79 51.9
Gohir.A03G007700 Gossypium hirsutum HOM05D000814 ORTHO05D005211 5.9e-13 77.4 78 50.0
Gorai.003G171900 Gossypium raimondii HOM05D000814 ORTHO05D005211 5.9e-13 77.4 78 50.0
Gohir.D03G163300 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.3e-12 76.3 78 48.7
Sabra01G0134500 Salix brachista HOM05D000814 ORTHO05D005211 1.7e-12 75.9 82 47.6
Duzib068G1367 Durio zibethinus HOM05D000814 ORTHO05D005211 1.1e-11 73.2 78 50.0
Manes.02G040900 Manihot esculenta HOM05D000814 ORTHO05D005211 1.1e-11 73.2 81 46.9
THA.LOC104806665 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.9e-11 72.4 78 47.4
Atru.chr9.1292 Acer truncatum HOM05D000814 ORTHO05D005211 2.5e-11 72.0 81 48.1
Potri.001G156700 Populus trichocarpa HOM05D000814 ORTHO05D005211 2.5e-11 72.0 82 45.1
Aa31sc265G40 Aethionema arabicum HOM05D000814 ORTHO05D005211 4.2e-11 71.2 78 46.2
C08p23220 Brassica napus HOM05D000814 ORTHO05D021422 5.5e-11 70.9 79 41.8
Gohir.A08G169200 Gossypium hirsutum HOM05D000814 ORTHO05D005211 5.5e-11 70.9 79 48.1
Gohir.D08G187600 Gossypium hirsutum HOM05D000814 ORTHO05D005211 7.2e-11 70.5 79 48.1
Gorai.004G197300 Gossypium raimondii HOM05D000814 ORTHO05D005211 7.2e-11 70.5 79 48.1
A06p45090 Brassica napus HOM05D000814 ORTHO05D005211 9.4e-11 70.1 78 43.6
Prupe.5G067500 Prunus persica HOM05D000814 ORTHO05D005211 9.4e-11 70.1 79 48.1
BolC8t49954H Brassica oleracea HOM05D000814 ORTHO05D021422 1.2e-10 69.7 79 41.8
CiPaw.11G080500 Carya illinoinensis HOM05D000814 ORTHO05D005211 1.2e-10 69.7 76 47.4
AT4G17350 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 1.6e-10 69.3 81 45.7
BraA06t25027Z Brassica rapa HOM05D000814 ORTHO05D005211 1.6e-10 69.3 78 44.9
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 1.6e-10 69.3 76 46.1
Glyma.01G207950 Glycine max HOM05D000814 ORTHO05D005211 1.6e-10 69.3 84 46.4
Sp2g12150 Schrenkiella parvula HOM05D000814 ORTHO05D005211 1.6e-10 69.3 79 44.3
C07p31060 Brassica napus HOM05D000814 ORTHO05D005211 2.1e-10 68.9 78 42.3
Potri.003G077900 Populus trichocarpa HOM05D000814 ORTHO05D005211 2.1e-10 68.9 82 45.1
Actinidia14417 Actinidia chinensis HOM05D000814 ORTHO05D005211 2.7e-10 68.6 79 44.3
BolC7t43650H Brassica oleracea HOM05D000814 ORTHO05D005211 2.7e-10 68.6 78 42.3
Ciclev10020521m.g Citrus clementina HOM05D000814 ORTHO05D005211 2.7e-10 68.6 79 46.8
Dinv39158 Davidia involucrata HOM05D000814 ORTHO05D005211 2.7e-10 68.6 79 43.0
Sp7g16830 Schrenkiella parvula HOM05D000814 ORTHO05D005211 3.6e-10 68.2 81 44.4
Sed0013197 Sechium edule HOM05D000814 ORTHO05D005211 3.6e-10 68.2 79 41.8
AL8G10590 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 6.1e-10 67.4 78 44.9
AT5G47440 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 6.1e-10 67.4 78 43.6
EL10Ac5g12380 Beta vulgaris HOM05D000814 ORTHO05D005211 6.1e-10 67.4 76 40.8
Carub.0007s2406 Capsella rubella HOM05D000814 ORTHO05D005211 6.1e-10 67.4 81 44.4
QL12p011702 Quercus lobata HOM05D000814 ORTHO05D005211 6.1e-10 67.4 79 44.3
Aa31LG6G90 Aethionema arabicum HOM05D000814 ORTHO05D005211 7.9e-10 67.0 81 43.2
BcaC09g50465 Brassica carinata HOM05D000814 ORTHO05D005211 7.9e-10 67.0 76 46.1
C01p25120 Brassica napus HOM05D000814 ORTHO05D005211 7.9e-10 67.0 76 46.1
BolC1t02464H Brassica oleracea HOM05D000814 ORTHO05D005211 7.9e-10 67.0 76 46.1
AUR62007101 Chenopodium quinoa HOM05D000814 ORTHO05D005211 7.9e-10 67.0 76 42.1
AUR62019964 Chenopodium quinoa HOM05D000814 ORTHO05D005211 7.9e-10 67.0 76 42.1
Duzib205G0663 Durio zibethinus HOM05D000814 ORTHO05D005211 7.9e-10 67.0 65 52.3
VMungo1215G2706 Vigna mungo HOM05D000814 ORTHO05D005211 7.9e-10 67.0 80 46.2
BcaNung00099 Brassica carinata HOM05D000814 ORTHO05D005211 1.0e-09 66.6 76 43.4
BraA06t27378Z Brassica rapa HOM05D000814 ORTHO05D005211 1.0e-09 66.6 77 44.2
CARHR223960 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.0e-09 66.6 76 44.7
RcHm_v2.0_Chr7g0203601 Rosa chinensis HOM05D000814 ORTHO05D005211 1.0e-09 66.6 79 43.0
AL7G37360 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 1.4e-09 66.2 81 43.2
A01p20020 Brassica napus HOM05D000814 ORTHO05D005211 1.4e-09 66.2 76 44.7
BraA01t01925Z Brassica rapa HOM05D000814 ORTHO05D005211 1.4e-09 66.2 76 44.7
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 1.4e-09 66.2 82 42.7
Thhalv10025351m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 1.4e-09 66.2 81 43.2
HanXRQChr17g0549341 Helianthus annuus HOM05D000814 ORTHO05D005211 1.4e-09 66.2 72 45.8
Rhsim11G0023800 Rhododendron simsii HOM05D000814 ORTHO05D005211 1.4e-09 66.2 81 43.2
C07p48710 Brassica napus HOM05D000814 ORTHO05D005211 1.8e-09 65.9 82 42.7
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 1.8e-09 65.9 82 42.7
Cc08_g12270 Coffea canephora HOM05D000814 ORTHO05D005211 2.3e-09 65.5 79 41.8
Glyma.11G034400 Glycine max HOM05D000814 ORTHO05D005211 2.3e-09 65.5 81 45.7
Phvul.002G057300 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 2.3e-09 65.5 81 46.9
BcaC06g34253 Brassica carinata HOM05D000814 ORTHO05D005211 3.0e-09 65.1 78 41.0
Sc01g0008350 Simmondsia chinensis HOM05D000814 ORTHO05D005211 3.0e-09 65.1 73 46.6
Hma1.2p1_1136F.1_g260500 Hydrangea macrophylla HOM05D000814 ORTHO05D005211 3.9e-09 64.7 76 39.5
THA.LOC104812807 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 3.9e-09 64.7 76 39.5
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 3.9e-09 64.7 72 43.1
vmacro00194 Vaccinium macrocarpon HOM05D000814 ORTHO05D005211 3.9e-09 64.7 75 44.0
Manes.01G081800 Manihot esculenta HOM05D000814 ORTHO05D005211 5.1e-09 64.3 81 40.7
PGR031G1372 Punica granatum HOM05D000814 ORTHO05D005211 5.1e-09 64.3 80 41.2
Cfa012735 Carpinus fangiana HOM05D000814 ORTHO05D005211 6.7e-09 63.9 71 46.5
Sed0021303 Sechium edule HOM05D000814 ORTHO05D005211 6.7e-09 63.9 79 38.0
arahy.Tifrunner.gnm1.ann1.3524WN Arachis hypogaea HOM05D000814 ORTHO05D005211 8.8e-09 63.5 79 45.6
arahy.Tifrunner.gnm1.ann1.L8S3TD Arachis hypogaea HOM05D000814 ORTHO05D005211 8.8e-09 63.5 79 45.6
BcaC07g39308 Brassica carinata HOM05D000814 ORTHO05D021422 8.8e-09 63.5 78 39.7
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 8.8e-09 63.5 79 43.0
ClCG01G004130 Citrullus lanatus HOM05D000814 ORTHO05D005211 8.8e-09 63.5 79 39.2
Thhalv10000905m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 1.1e-08 63.2 78 41.0
BcaNung03467 Brassica carinata HOM05D000814 ORTHO05D005211 1.5e-08 62.8 77 42.9
CsaV3_5G004300 Cucumis sativus L. HOM05D000814 ORTHO05D005211 1.5e-08 62.8 79 39.2
FvH4_5g19120 Fragaria vesca HOM05D000814 ORTHO05D005211 1.5e-08 62.8 79 41.8
FAN04G0530 Fragaria x ananassa HOM05D000814 ORTHO05D005211 1.5e-08 62.8 79 41.8
FAN13G2837 Fragaria x ananassa HOM05D000814 ORTHO05D005211 1.5e-08 62.8 79 41.8
FAN18G3684 Fragaria x ananassa HOM05D000814 ORTHO05D005211 1.5e-08 62.8 79 41.8
Lalb_Chr16g0386761 Lupinus albus HOM05D000814 ORTHO05D005211 1.5e-08 62.8 76 44.7
Hund14569 Selenicereus undatus HOM05D000814 ORTHO05D005211 1.5e-08 62.8 72 44.4
Ca_24587_v3 Cicer arietinum L. HOM05D000814 ORTHO05D005211 1.9e-08 62.4 81 44.4
Phvul.003G221700 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 1.9e-08 62.4 81 43.2
Sabra03G0048300 Salix brachista HOM05D000814 ORTHO05D005211 1.9e-08 62.4 85 42.4
arahy.Tifrunner.gnm1.ann1.2V173I Arachis hypogaea HOM05D000814 ORTHO05D005211 2.5e-08 62.0 75 44.0
MELO3C005525.2 Cucumis melo HOM05D000814 ORTHO05D005211 2.5e-08 62.0 79 38.0
Eucgr.D02093 Eucalyptus grandis HOM05D000814 ORTHO05D005211 2.5e-08 62.0 79 44.3
CSS0027660 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 3.3e-08 61.6 70 41.4
CSS0045982 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 3.3e-08 61.6 70 41.4
FAN08G2394 Fragaria x ananassa HOM05D000814 ORTHO05D005211 3.3e-08 61.6 79 40.5
MD06G1056800 Malus domestica HOM05D000814 ORTHO05D005211 3.3e-08 61.6 79 40.5
Actinidia28208 Actinidia chinensis HOM05D000814 ORTHO05D005211 4.3e-08 61.2 60 50.0
BcaC06g33543 Brassica carinata HOM05D000814 ORTHO05D005211 4.3e-08 61.2 66 47.0
Oeu020435.1 Olea europaea HOM05D000814 ORTHO05D005211 4.3e-08 61.2 81 42.0
Ah.12g054220 Amaranthus hybridus HOM05D000814 ORTHO05D005211 5.7e-08 60.8 76 39.5
arahy.Tifrunner.gnm1.ann1.EJ5RI6 Arachis hypogaea HOM05D000814 ORTHO05D005211 5.7e-08 60.8 75 42.7
SalBow6G5366 Salvia bowleyana HOM05D000814 ORTHO05D005211 5.7e-08 60.8 79 44.3
BcaC06g31387 Brassica carinata HOM05D000814 ORTHO05D005211 7.4e-08 60.5 78 39.7
CARHR173930 Cardamine hirsuta HOM05D000814 ORTHO05D005211 7.4e-08 60.5 64 46.9
Glyma.05G060600 Glycine max HOM05D000814 ORTHO05D005211 7.4e-08 60.5 81 40.7
TPR.G18142 Trifolium pratense HOM05D000814 ORTHO05D005211 7.4e-08 60.5 79 44.3
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 7.4e-08 60.5 76 39.5
DCAR_004964 Daucus carota HOM05D000814 ORTHO05D005211 9.7e-08 60.1 76 42.1
Glyma.17G142900 Glycine max HOM05D000814 ORTHO05D005211 1.3e-07 59.7 81 40.7
Hund11603 Selenicereus undatus HOM05D000814 ORTHO05D005211 1.3e-07 59.7 76 36.8
Lj2A220T37 Lonicera japonica HOM05D000814 ORTHO05D005211 1.7e-07 59.3 80 43.8
Medtr5g012870 Medicago truncatula HOM05D000814 ORTHO05D005211 2.2e-07 58.9 66 48.5
A06p19480 Brassica napus HOM05D000814 ORTHO05D005211 2.8e-07 58.5 79 40.5
CANSAT21G0925 Cannabis sativa HOM05D000814 ORTHO05D005211 6.3e-07 57.4 71 42.3
Lalb_Chr16g0379521 Lupinus albus HOM05D000814 ORTHO05D005211 6.3e-07 57.4 61 49.2
Psat2g176920 Pisum sativum HOM05D000814 ORTHO05D005211 6.3e-07 57.4 81 42.0
Lj2g0025416 Lotus japonicus HOM05D000814 ORTHO05D005211 8.2e-07 57.0 81 43.2
ECA233G5265 Erigeron canadensis HOM05D000814 ORTHO05D005211 1.4e-06 56.2 72 40.3
ATR0315G031 Amborella trichopoda HOM05D000814 ORTHO05D001161 1.8e-06 55.8 60 41.7
COL.COLO4_08921 Corchorus olitorius HOM05D000814 ORTHO05D021422 1.8e-06 55.8 51 54.9
CAN.G1058.47 Capsicum annuum HOM05D000814 ORTHO05D005211 4.1e-06 54.7 79 36.7


User provided reference genes

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