Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 0.0e+00 1131.7 607 100.0
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.8e-304 1046.2 612 93.0
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 9.2e-286 986.5 620 88.9
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 4.6e-285 984.2 620 88.7
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 5.6e-283 977.2 620 88.5
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 4.5e-240 834.7 647 76.2
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 4.1e-209 731.9 677 66.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 5.9e-200 701.4 679 64.2
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.7e-199 699.9 682 63.9
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.0e-195 686.4 679 63.6
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.0e-185 651.4 669 61.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.1e-182 644.0 604 67.1
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 4.7e-165 585.5 636 62.6
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 5.8e-155 552.0 622 57.9
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.4e-115 419.9 622 49.7
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-113 414.8 593 52.3
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 3.2e-89 333.6 706 40.9
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.4e-84 318.2 629 41.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.4e-84 317.4 656 41.3
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 7.0e-84 315.8 618 41.1
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 9.4e-81 305.4 697 38.3
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.0e-79 300.4 613 41.4
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.8e-79 299.3 672 38.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.5e-78 298.1 687 37.4
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.4e-76 289.7 527 43.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.1e-76 288.9 541 42.1
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.6e-75 288.1 719 36.6
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.9e-74 283.9 707 38.0
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.0e-74 283.1 740 36.8
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.6e-74 282.3 707 38.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 8.6e-74 282.3 735 36.2
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 3.3e-73 280.4 729 38.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.3e-73 280.4 729 38.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.2e-73 280.0 729 38.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.8e-71 274.6 698 37.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.0e-71 273.9 755 34.6
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.5e-70 271.6 629 39.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 9.8e-70 268.9 654 37.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.2e-69 267.7 684 37.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.4e-68 264.2 175 81.1
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.2e-67 261.9 431 43.9
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.7e-67 260.8 723 35.3
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.0e-66 258.8 680 35.4
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 5.0e-66 256.5 651 38.2
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 5.0e-66 256.5 741 34.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 6.6e-66 256.1 703 35.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 6.6e-66 256.1 713 34.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.6e-66 255.8 705 35.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.6e-66 255.8 748 36.0
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.8e-64 250.8 665 37.1
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.6e-64 250.4 733 35.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.2e-62 245.4 658 35.4
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.0e-62 244.6 672 34.4
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.0e-62 244.6 655 34.0
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 5.8e-62 243.0 690 34.2
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.2e-61 241.1 651 36.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.7e-61 240.4 567 37.9
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 6.4e-61 239.6 717 34.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.1e-60 238.8 688 35.0
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.9e-60 238.0 427 45.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.4e-60 237.7 736 33.7
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.1e-60 236.9 754 32.2
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.6e-59 235.0 542 39.5
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 4.6e-59 233.4 659 33.4
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 6.0e-59 233.0 687 33.8
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 6.0e-59 233.0 527 38.5
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.0e-58 232.3 532 39.7
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.7e-58 231.5 752 32.7
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.0e-58 230.7 571 38.4
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.0e-58 230.7 762 33.1
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.9e-58 230.3 618 36.1
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 6.6e-58 229.6 662 32.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.5e-57 228.4 715 35.2
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 2.5e-57 227.6 661 32.8
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.6e-57 226.5 526 39.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.6e-56 224.9 662 32.3
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 4.7e-56 223.4 666 34.8
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 3.1e-55 220.7 647 34.9
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.0e-55 220.3 515 38.4
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 4.0e-55 220.3 510 38.6
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.5e-54 218.4 628 35.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.9e-53 214.2 662 33.5
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 9.2e-52 209.1 511 37.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.5e-51 207.2 489 37.4
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.9e-50 203.8 767 31.2
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-48 198.4 542 36.2
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.1e-48 198.0 627 34.8
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 2.1e-48 198.0 625 33.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.1e-48 198.0 504 37.7
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 2.8e-48 197.6 479 37.6
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 4.0e-47 193.7 696 31.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.0e-47 193.7 722 30.9
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.5e-46 191.8 549 33.7
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.7e-45 187.2 529 34.0
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 4.9e-45 186.8 305 45.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.9e-45 186.8 204 59.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.4e-44 185.3 765 29.9
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.4e-44 185.3 643 30.6
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 3.2e-44 184.1 719 30.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-44 184.1 796 28.9
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 5.4e-44 183.3 605 32.7
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.1e-44 183.0 236 47.9
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.0e-42 179.1 611 31.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 5.1e-42 176.8 610 33.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 4.7e-40 170.2 698 29.9
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 4.0e-39 167.2 606 32.2
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 7.6e-38 162.9 600 30.8
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 4.9e-37 160.2 661 31.8
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.9e-36 158.3 498 32.5
A08p12810 Brassica napus HOM05D004882 ORTHO05D005551 4.2e-36 157.1 136 71.3
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.7e-34 151.8 608 30.4
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.5e-33 147.9 817 27.5
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.6e-33 146.0 624 32.1
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 8.1e-32 142.9 538 30.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 9.0e-31 139.4 584 30.0
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.0e-30 138.3 679 27.4
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 7.6e-30 136.3 615 31.7
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 9.9e-30 136.0 396 36.6
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.1e-28 132.5 534 28.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-25 122.1 74 79.7
A02p22620 Brassica napus HOM05D016870 ORTHO05D005551 7.9e-19 99.8 76 75.0
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.3e-16 92.4 696 27.7
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.8e-16 91.3 71 59.2
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 3.2e-12 77.8 110 50.0
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.2e-11 75.9 145 41.4
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.6e-11 75.5 80 50.0
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-09 68.9 40 75.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 7.4e-09 66.6 59 57.6
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.4e-07 61.6 87 39.1
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.3e-07 60.5 63 49.2
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 6.9e-07 60.1 154 33.8
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 1.2e-06 59.3 65 53.8
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.0e-05 56.2 160 34.4


User provided reference genes

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