Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 9.0e-190 666.8 338 100.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 9.9e-189 663.3 337 99.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.9e-188 661.8 338 99.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.9e-188 661.8 338 99.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.1e-185 651.0 333 98.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 9.6e-184 646.7 336 96.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 7.6e-181 637.1 336 94.6
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.6e-167 592.8 304 97.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.8e-167 591.3 337 90.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.6e-162 575.1 321 88.2
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.6e-162 574.7 337 85.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 5.1e-161 571.2 342 84.2
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 4.3e-160 568.2 337 84.3
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 8.2e-159 563.9 333 84.7
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.4e-158 562.4 318 87.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 6.9e-158 560.8 338 82.5
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.0e-157 559.3 337 82.2
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 7.7e-157 557.4 337 82.2
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.0e-156 557.0 321 84.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.7e-156 556.2 337 81.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.1e-155 553.5 337 80.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 5.5e-155 551.2 333 81.7
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 7.2e-155 550.8 321 83.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.2e-154 550.1 320 83.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 7.9e-154 547.4 334 82.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.4e-153 546.6 338 80.5
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.8e-153 546.2 338 80.5
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 3.9e-153 545.0 339 79.9
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.5e-152 543.1 339 79.9
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.5e-152 543.1 338 79.6
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.5e-152 543.1 338 79.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.4e-152 541.6 338 79.0
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 4.4e-152 541.6 316 82.9
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.7e-152 541.2 321 82.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.7e-151 539.7 322 82.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 6.3e-151 537.7 319 82.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 8.2e-151 537.3 338 79.0
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.8e-150 536.2 337 78.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.8e-150 536.2 337 78.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.4e-150 535.8 323 80.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 5.3e-150 534.6 338 79.3
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 5.3e-150 534.6 338 79.0
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.6e-149 532.3 338 78.4
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.5e-149 531.9 337 78.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.5e-149 531.6 336 78.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 5.9e-149 531.2 339 79.6
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-148 530.0 338 77.5
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.8e-148 528.5 338 77.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 6.5e-148 527.7 338 77.2
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 6.5e-148 527.7 374 72.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 8.5e-148 527.3 337 78.0
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 8.5e-148 527.3 324 78.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.5e-147 526.6 340 77.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.5e-147 525.8 337 77.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 3.2e-147 525.4 341 76.8
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.2e-147 524.2 336 78.0
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 7.2e-147 524.2 337 78.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.6e-146 523.1 319 80.9
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.1e-146 522.7 323 78.0
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 3.6e-146 521.9 341 77.4
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 6.1e-146 521.2 318 78.6
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 8.0e-146 520.8 318 78.6
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 8.0e-146 520.8 329 78.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 3.0e-145 518.8 338 76.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 5.2e-145 518.1 324 77.2
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-144 516.2 350 74.9
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.0e-144 516.2 320 78.8
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 2.6e-144 515.8 338 76.0
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 4.4e-144 515.0 334 74.3
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 7.5e-144 514.2 336 76.5
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.7e-143 513.1 341 74.2
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.8e-143 512.3 374 70.3
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.7e-143 511.9 327 75.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.7e-143 511.9 339 74.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-143 511.1 350 74.6
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.8e-142 509.6 378 69.6
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 4.1e-142 508.4 315 78.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.3e-142 508.1 320 77.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.0e-141 506.1 339 73.7
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 2.0e-141 506.1 381 68.5
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.0e-141 506.1 317 78.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-140 503.4 329 77.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-140 503.1 329 77.2
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.2e-140 502.7 320 75.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.9e-140 502.3 320 75.6
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-139 500.4 337 74.5
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 4.7e-138 495.0 335 73.4
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.3e-137 492.7 407 65.4
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.2e-137 491.5 338 73.7
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.0e-136 489.6 324 76.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 8.3e-135 484.2 337 71.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.8e-134 483.0 318 73.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.5e-131 472.6 316 71.2
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 9.8e-128 460.7 337 69.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 7.0e-126 454.5 350 64.9
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.8e-124 448.7 349 64.8
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 3.3e-123 445.7 332 67.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 9.5e-123 444.1 344 65.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 7.8e-117 424.5 250 82.4
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.7e-116 423.3 249 83.9
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 8.6e-116 421.0 248 80.6
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.3e-113 412.9 250 79.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 5.8e-112 408.3 243 80.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.0e-108 396.0 307 64.5
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.3e-107 392.5 324 63.6
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 3.3e-107 392.5 361 60.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 4.3e-107 392.1 339 64.3
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.5e-104 383.6 324 62.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.3e-103 380.6 242 76.0
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-98 362.8 232 78.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.2e-96 357.5 316 60.1
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.9e-91 340.1 198 82.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-72 276.2 226 66.4
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.7e-69 266.5 346 44.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.9e-67 260.4 168 73.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 4.3e-67 259.2 263 50.2
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.0e-64 250.4 353 44.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 7.9e-61 238.4 134 82.1
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.5e-59 233.4 136 80.9
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.0e-55 221.5 228 50.4
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 5.5e-54 215.7 130 78.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-36 157.9 137 62.8
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.9e-36 156.4 137 62.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-35 154.5 148 52.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.4e-35 152.9 139 61.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 7.4e-35 152.1 113 67.3
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 9.7e-35 151.8 102 75.5
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 130 60.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 130 60.8
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.0e-31 141.7 130 60.0
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 8.5e-31 138.7 107 66.4
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.2e-30 136.3 199 46.2
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 4.7e-29 132.9 72 90.3
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.8e-23 113.2 66 89.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.2e-22 109.8 100 60.0
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.6e-21 106.7 78 64.1
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 8.0e-21 105.5 60 86.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-19 100.9 208 38.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.4e-19 99.8 61 80.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.5e-19 99.0 67 74.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.2e-18 97.4 81 64.2
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.1e-17 93.2 81 63.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 6.1e-13 79.3 50 78.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 6.1e-13 79.3 51 74.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.8e-10 70.5 59 61.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 3.3e-06 57.0 55 50.9


User provided reference genes

Program Settings