Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.9e-160 569.7 438 100.0
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 1.7e-148 530.0 430 97.4
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.7e-132 476.9 436 82.6
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 6.1e-122 441.8 431 80.7
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.0e-121 441.0 431 81.2
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 2.0e-120 436.8 431 81.2
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 1.8e-102 377.1 442 80.3
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 2.9e-100 369.8 442 75.6
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.7e-95 354.0 440 68.4
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 5.4e-62 242.7 207 70.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.9e-59 234.2 209 67.0
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 5.8e-56 222.6 208 63.0
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 9.9e-56 221.9 210 62.4
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 1.5e-48 198.0 207 56.0
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 3.3e-43 180.3 213 52.1
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 3.7e-42 176.8 430 50.5
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 2.3e-36 157.5 210 44.8
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 8.7e-36 155.6 218 44.0
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.1e-35 155.2 230 38.3
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 7.4e-35 152.5 218 38.5
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 2.8e-34 150.6 206 40.8
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.4e-33 148.3 159 47.8
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 2.4e-33 147.5 210 42.9
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 5.3e-33 146.4 159 47.8
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 6.9e-33 146.0 165 46.1
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 9.0e-33 145.6 184 42.4
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 1.2e-32 145.2 210 41.4
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.2e-32 145.2 278 35.3
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 1.5e-32 144.8 240 37.9
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 2.6e-32 144.1 205 39.0
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 2.6e-32 144.1 199 40.2
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.4e-32 143.7 206 39.8
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 4.5e-32 143.3 216 39.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 5.8e-32 142.9 170 44.7
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 5.8e-32 142.9 270 35.6
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 5.8e-32 142.9 205 40.5
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 3.8e-31 140.2 213 41.3
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 3.8e-31 140.2 209 41.1
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 6.5e-31 139.4 162 43.2
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.1e-30 138.7 159 45.9
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 7.2e-30 136.0 160 41.9
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 1.2e-29 135.2 159 44.0
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.7e-29 134.0 214 35.0
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 6.1e-29 132.9 160 43.8
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 7.9e-29 132.5 72 93.1
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 5.7e-27 126.3 199 37.2
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.3e-26 125.2 134 45.5
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.2e-26 124.4 170 40.0
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.8e-26 124.0 199 37.2
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 3.7e-26 123.6 205 37.6
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 4.8e-26 123.2 170 37.6
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 8.2e-26 122.5 193 33.2
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 8.2e-26 122.5 193 33.2
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 1.1e-25 122.1 193 33.2
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 1.1e-25 122.1 157 42.7
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 2.4e-25 120.9 168 42.9
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 3.1e-25 120.6 156 42.9
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 3.1e-25 120.6 190 36.3
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 9.0e-25 119.0 170 38.2
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.2e-24 118.6 229 34.1
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 2.0e-24 117.9 129 45.7
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 2.0e-24 117.9 135 44.4
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 3.4e-24 117.1 160 40.6
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 5.9e-24 116.3 191 34.6
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.0e-23 115.5 215 33.5
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 3.8e-23 113.6 190 34.2
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 5.0e-23 113.2 222 34.2
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 8.5e-23 112.5 188 36.7
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.9e-22 111.3 160 38.8
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 3.2e-22 110.5 138 42.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 7.2e-22 109.4 175 38.3
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 9.4e-22 109.0 183 33.3
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 2.7e-21 107.5 134 39.6
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 2.7e-21 107.5 138 39.1
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 4.6e-21 106.7 179 37.4
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.8e-20 104.8 181 32.0
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 2.3e-20 104.4 194 32.5
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.3e-20 104.4 134 37.3
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 2.5e-19 100.9 211 31.3
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 3.3e-19 100.5 188 31.9
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 9.7e-19 99.0 215 29.3
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 9.7e-19 99.0 129 42.6
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 6.3e-18 96.3 129 40.3
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 3.0e-12 77.4 132 31.1
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 3.0e-12 77.4 78 55.1
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-11 75.1 128 34.4
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 2.6e-11 74.3 74 50.0
A09p41780 Brassica napus HOM05D007426 ORTHO05D009167 3.3e-11 73.9 63 65.1
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 8.5e-07 59.3 129 27.9
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 1.5e-06 58.5 79 36.7
AUR62014630 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.5e-06 57.8 82 34.1
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.5e-06 57.8 82 34.1
Zm00001eb359970 Zea mays HOM05D002986 ORTHO05D007611 2.5e-06 57.8 77 36.4
Glyma.14G032600 Glycine max HOM05D002737 ORTHO05D009499 3.2e-06 57.4 84 36.9
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 4.2e-06 57.0 116 33.6
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 7.2e-06 56.2 176 30.1


User provided reference genes

Program Settings