Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p19140 Brassica napus HOM05D005634 ORTHO05D006926 5.3e-99 364.4 189 100.0
BraA01t01856Z Brassica rapa HOM05D005634 ORTHO05D006926 1.6e-98 362.8 188 99.5
BcaC09g50547 Brassica carinata HOM05D005634 ORTHO05D006926 1.7e-97 359.4 188 98.4
C01p24050 Brassica napus HOM05D005634 ORTHO05D006926 1.7e-97 359.4 188 98.4
BolC1t02361H Brassica oleracea HOM05D005634 ORTHO05D006926 1.7e-97 359.4 188 98.4
Thhalv10026171m.g Eutrema salsugineum HOM05D005634 ORTHO05D006926 4.0e-94 348.2 188 94.1
BcaNung01637 Brassica carinata HOM05D005634 ORTHO05D006926 7.5e-93 344.0 191 94.8
Carub.0007s1312 Capsella rubella HOM05D005634 ORTHO05D006926 1.2e-82 310.1 192 85.9
AT4G27700 Arabidopsis thaliana HOM05D005634 ORTHO05D006926 7.7e-82 307.4 190 86.3
AL7G24960 Arabidopsis lyrata HOM05D005634 ORTHO05D006926 1.7e-81 306.2 190 85.8
CARHR235430 Cardamine hirsuta HOM05D005634 ORTHO05D006926 3.3e-80 302.0 191 85.3
Sp7g25680 Schrenkiella parvula HOM05D005634 ORTHO05D006926 6.8e-78 294.3 188 85.6
THA.LOC104799954 Tarenaya hassleriana HOM05D005634 ORTHO05D006926 4.7e-71 271.6 188 76.1
Aa31LG11G15270 Aethionema arabicum HOM05D005634 ORTHO05D006926 1.4e-67 260.0 200 72.0
Cpa.g.sc3.123 Carica papaya HOM05D005634 ORTHO05D006926 1.6e-63 246.5 199 69.3
Aqoxy5G04258 Aquilegia oxysepala HOM05D005634 ORTHO05D006926 4.7e-63 245.0 193 67.4
MBI12_g30967_MAGBIO Magnolia biondii HOM05D005634 ORTHO05D006926 6.2e-63 244.6 188 69.7
Atru.chr12.2317 Acer truncatum HOM05D005634 ORTHO05D006926 1.1e-62 243.8 202 67.3
CANSAT21G2451 Cannabis sativa HOM05D005634 ORTHO05D006926 8.9e-62 240.7 197 67.0
QL09p007605 Quercus lobata HOM05D005634 ORTHO05D006926 8.9e-62 240.7 202 67.3
CSS0047779 Camellia sinensis var. sinensis HOM05D005634 ORTHO05D006926 1.2e-61 240.4 192 68.8
CsaV3_3G019650 Cucumis sativus L. HOM05D005634 ORTHO05D006926 1.2e-61 240.4 178 71.3
Duzib084G0100 Durio zibethinus HOM05D005634 ORTHO05D006926 1.2e-61 240.4 196 66.3
Cc02_g01130 Coffea canephora HOM05D005634 ORTHO05D006926 2.6e-61 239.2 150 76.7
Cfa016192 Carpinus fangiana HOM05D005634 ORTHO05D006926 3.4e-61 238.8 197 67.0
Oeu037042.1 Olea europaea HOM05D005634 ORTHO05D006926 4.4e-61 238.4 184 68.5
HanXRQChr06g0175631 Helianthus annuus HOM05D005634 ORTHO05D006926 5.8e-61 238.0 196 66.3
TAR629G3370 Trochodendron aralioides HOM05D005634 ORTHO05D006926 5.8e-61 238.0 191 67.5
Nn1g00367 Nelumbo nucifera HOM05D005634 ORTHO05D006926 7.5e-61 237.7 149 78.5
EL10Ac3g05237 Beta vulgaris HOM05D005634 ORTHO05D006926 9.8e-61 237.3 175 70.3
Glyma.04G232400 Glycine max HOM05D005634 ORTHO05D006926 9.8e-61 237.3 198 68.2
Lj1g0021546 Lotus japonicus HOM05D005634 ORTHO05D006926 9.8e-61 237.3 201 66.7
Phvul.009G048400 Phaseolus vulgaris HOM05D005634 ORTHO05D006926 9.8e-61 237.3 142 81.7
MELO3C019382.2 Cucumis melo HOM05D005634 ORTHO05D006926 1.3e-60 236.9 149 78.5
Lsat_1_v5_gn_8_5560 Lactuca sativa HOM05D005634 ORTHO05D006926 1.3e-60 236.9 195 67.7
MD07G1296000 Malus domestica HOM05D005634 ORTHO05D006926 1.3e-60 236.9 199 66.8
Thecc.03G204700 Theobroma cacao HOM05D005634 ORTHO05D006926 1.3e-60 236.9 202 63.9
Glyma.06G132600 Glycine max HOM05D005634 ORTHO05D006926 1.7e-60 236.5 198 66.7
GSVIVG01038606001 Vitis vinifera HOM05D005634 ORTHO05D006926 1.7e-60 236.5 202 65.8
Ca_16737_v3 Cicer arietinum L. HOM05D005634 ORTHO05D006926 2.2e-60 236.1 197 65.0
PGR142G2679 Punica granatum HOM05D005634 ORTHO05D006926 2.2e-60 236.1 142 79.6
VMungo1309G1289 Vigna mungo HOM05D005634 ORTHO05D006926 2.2e-60 236.1 197 67.5
COL.COLO4_16824 Corchorus olitorius HOM05D005634 ORTHO05D006926 2.9e-60 235.7 200 67.0
Actinidia18672 Actinidia chinensis HOM05D005634 ORTHO05D006926 4.9e-60 235.0 200 65.0
Potri.015G008000 Populus trichocarpa HOM05D005634 ORTHO05D006926 4.9e-60 235.0 202 64.9
vmacro10142 Vaccinium macrocarpon HOM05D005634 ORTHO05D006926 4.9e-60 235.0 201 65.7
arahy.Tifrunner.gnm1.ann1.P45MK1 Arachis hypogaea HOM05D005634 ORTHO05D006926 6.4e-60 234.6 193 66.8
Manes.01G037500 Manihot esculenta HOM05D005634 ORTHO05D006926 6.4e-60 234.6 202 64.4
arahy.Tifrunner.gnm1.ann1.WWF9U9 Arachis hypogaea HOM05D005634 ORTHO05D006926 8.3e-60 234.2 193 66.8
Nitab4.5_0000015g0180 Nicotiana tabacum HOM05D005634 ORTHO05D006926 8.3e-60 234.2 144 79.9
ECA233G0867 Erigeron canadensis HOM05D005634 ORTHO05D006926 1.1e-59 233.8 200 65.0
MD01G1225500 Malus domestica HOM05D005634 ORTHO05D006926 1.1e-59 233.8 197 65.5
Prupe.2G315600 Prunus persica HOM05D005634 ORTHO05D006926 1.1e-59 233.8 195 67.2
Sed0004447 Sechium edule HOM05D005634 ORTHO05D006926 1.4e-59 233.4 150 77.3
Solyc06g053140.3 Solanum lycopersicum HOM05D005634 ORTHO05D006926 1.9e-59 233.0 194 66.0
CiPaw.05G201100 Carya illinoinensis HOM05D005634 ORTHO05D006926 2.4e-59 232.6 190 66.8
Gohir.D08G113300 Gossypium hirsutum HOM05D005634 ORTHO05D006926 3.2e-59 232.3 190 64.2
Glyma.14G118100 Glycine max HOM05D005634 ORTHO05D006926 4.1e-59 231.9 142 76.8
DCAR_014553 Daucus carota HOM05D005634 ORTHO05D006926 5.4e-59 231.5 142 77.5
PGSC0003DMG400005464 Solanum tuberosum HOM05D005634 ORTHO05D006926 5.4e-59 231.5 197 64.5
CAN.G414.9 Capsicum annuum HOM05D005634 ORTHO05D006926 7.0e-59 231.1 194 65.5
Migut.F00174 Erythranthe guttata HOM05D005634 ORTHO05D006926 7.0e-59 231.1 196 65.8
Gohir.A08G102100 Gossypium hirsutum HOM05D005634 ORTHO05D006926 7.0e-59 231.1 201 63.7
Oeu061008.1 Olea europaea HOM05D005634 ORTHO05D006926 7.0e-59 231.1 178 67.4
Ah.07g205160 Amaranthus hybridus HOM05D005634 ORTHO05D006926 9.2e-59 230.7 184 65.2
Ciclev10021946m.g Citrus clementina HOM05D005634 ORTHO05D006926 9.2e-59 230.7 193 65.8
Sopen06g018200 Solanum pennellii HOM05D005634 ORTHO05D006926 9.2e-59 230.7 194 64.9
Sc25g0000970 Simmondsia chinensis HOM05D005634 ORTHO05D006926 1.2e-58 230.3 193 64.2
CDE09G0596 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 1.6e-58 229.9 189 66.1
Medtr3g092040 Medicago truncatula HOM05D005634 ORTHO05D006926 2.7e-58 229.2 194 63.9
Peaxi162Scf00618g00219 Petunia axillaris HOM05D005634 ORTHO05D006926 3.5e-58 228.8 202 63.4
MSTRG.27003 Avicennia marina HOM05D005634 ORTHO05D006926 4.6e-58 228.4 190 65.3
Nitab4.5_0001829g0010 Nicotiana tabacum HOM05D005634 ORTHO05D006926 4.6e-58 228.4 197 63.5
PSO782G0763 Papaver somniferum HOM05D005634 ORTHO05D006926 4.6e-58 228.4 193 63.7
ATR0620G015 Amborella trichopoda HOM05D005634 ORTHO05D006926 6.0e-58 228.0 155 73.5
Lalb_Chr11g0067121 Lupinus albus HOM05D005634 ORTHO05D006926 6.0e-58 228.0 203 65.0
Psat5g074680 Pisum sativum HOM05D005634 ORTHO05D006926 7.8e-58 227.6 197 65.0
SGA_v2.0_scaffold18G08443 Striga asiatica HOM05D002361 ORTHO05D006926 7.8e-58 227.6 151 74.2
Haze_00263 Corylus avellana HOM05D005634 ORTHO05D006926 1.0e-57 227.3 128 84.4
Rhsim09G0207900 Rhododendron simsii HOM05D005634 ORTHO05D006926 1.3e-57 226.9 219 60.7
unitig_0.g1985 Utricularia gibba HOM05D005634 ORTHO05D006926 1.3e-57 226.9 181 64.6
Gorai.004G122200 Gossypium raimondii HOM05D005634 ORTHO05D006926 1.7e-57 226.5 191 63.4
AUR62035571 Chenopodium quinoa HOM05D005634 ORTHO05D006926 2.3e-57 226.1 199 61.3
FAN03G3354 Fragaria x ananassa HOM05D005634 ORTHO05D006926 2.3e-57 226.1 193 64.8
TWI39G0994 Tripterygium wilfordii HOM05D005634 ORTHO05D006926 2.3e-57 226.1 202 64.9
Lj3A901T75 Lonicera japonica HOM05D005634 ORTHO05D006926 3.0e-57 225.7 128 83.6
Sabra15G0006100 Salix brachista HOM05D005634 ORTHO05D006926 3.9e-57 225.3 165 69.7
FAN10G1744 Fragaria x ananassa HOM05D005634 ORTHO05D006926 5.1e-57 224.9 194 64.4
Potri.012G020700 Populus trichocarpa HOM05D005634 ORTHO05D006926 5.1e-57 224.9 202 62.4
CDE11G0057 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 6.6e-57 224.6 128 82.8
Eucgr.K00410 Eucalyptus grandis HOM05D005634 ORTHO05D006926 6.6e-57 224.6 203 62.1
SalBow4G1390 Salvia bowleyana HOM05D005634 ORTHO05D006926 1.5e-56 223.4 129 82.2
Os09g0530000 Oryza sativa ssp. japonica HOM05D005634 ORTHO05D006926 2.5e-56 222.6 142 74.6
RcHm_v2.0_Chr1g0381981 Rosa chinensis HOM05D005634 ORTHO05D006926 2.5e-56 222.6 145 75.9
AUR62006058 Chenopodium quinoa HOM05D005634 ORTHO05D006926 3.3e-56 222.2 179 65.4
FAN01G0994 Fragaria x ananassa HOM05D005634 ORTHO05D006926 7.3e-56 221.1 194 64.4
Lalb_Chr08g0239991 Lupinus albus HOM05D005634 ORTHO05D006926 1.6e-55 219.9 200 63.0
Sabra05G0139500 Salix brachista HOM05D005634 ORTHO05D006926 5.8e-53 211.5 204 59.3
Sabra12G0012500 Salix brachista HOM05D005634 ORTHO05D006926 9.9e-53 210.7 213 58.7
Dinv29241 Davidia involucrata HOM05D005634 ORTHO05D006926 1.0e-49 200.7 179 64.8
SEGI_37163 Sequoiadendron giganteum HOM05D005634 ORTHO05D006926 1.5e-48 196.8 186 56.5
Hund21024 Selenicereus undatus HOM05D005634 ORTHO05D006926 8.1e-47 191.0 119 74.8
Pp3c15_4960 Physcomitrium patens HOM05D005634 ORTHO05D006926 5.2e-46 188.3 143 62.2
ClCG05G009130 Citrullus lanatus HOM05D005634 ORTHO05D006926 2.6e-45 186.0 159 65.4
Mapoly0050s0021 Marchantia polymorpha HOM05D005634 ORTHO05D006926 9.9e-45 184.1 143 60.1
SMO141G0293 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 1.3e-44 183.7 137 63.5
AagrBONN_evm.TU.Sc2ySwM_344.430 Anthoceros agrestis HOM05D005634 ORTHO05D006926 1.7e-44 183.3 142 61.3
BcaC03g17858 Brassica carinata HOM05D005634 ORTHO05D006926 1.7e-44 183.3 95 90.5
Zm00001eb319210 Zea mays HOM05D005634 ORTHO05D006926 9.2e-43 177.6 109 78.9
Dinv35363 Davidia involucrata HOM05D005634 ORTHO05D006926 1.1e-40 170.6 154 61.7
FvH4_7g32420 Fragaria vesca HOM05D005634 ORTHO05D006926 1.1e-40 170.6 161 62.1
A07p23910 Brassica napus HOM05D005634 ORTHO05D006926 9.6e-40 167.5 86 91.9
BraA10t44343Z Brassica rapa HOM05D005634 ORTHO05D006926 9.6e-40 167.5 86 91.9
CBR_g3780 Chara braunii HOM05D005634 ORTHO05D006926 1.2e-37 160.6 143 55.9
BcaC01g00747 Brassica carinata HOM05D005634 ORTHO05D006926 1.1e-32 144.1 72 93.1
TPR.G33661 Trifolium pratense HOM05D005634 ORTHO05D006926 2.2e-28 129.8 136 57.4
HPP92_002499 Vanilla planifolia HOM05D005634 ORTHO05D006926 2.1e-26 123.2 76 72.4
Cre16.g650050 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 2.2e-20 103.2 133 37.6
Hma1.2p1_0512F.1_g169290 Hydrangea macrophylla HOM05D005634 ORTHO05D006926 1.6e-18 97.1 126 54.8
C03p83850 Brassica napus HOM05D005634 ORTHO05D006926 2.1e-15 86.7 47 89.4
C09p11080 Brassica napus HOM05D005634 ORTHO05D006926 2.1e-15 86.7 47 89.4
BolC3t20661H Brassica oleracea HOM05D005634 ORTHO05D006926 2.1e-15 86.7 47 89.4
C02p59000 Brassica napus HOM05D005634 ORTHO05D006926 3.7e-15 85.9 47 87.2
BolC2t11955H Brassica oleracea HOM05D005634 ORTHO05D006926 3.7e-15 85.9 47 87.2
AagrBONN_evm.TU.Sc2ySwM_362.2890 Anthoceros agrestis HOM05D005634 ORTHO05D006926 1.2e-10 70.9 113 34.5
Cre01.g003550 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 1.2e-10 70.9 164 35.4
Potri.006G100600 Populus trichocarpa HOM05D002957 ORTHO05D009332 3.9e-09 65.9 126 31.0
SMO169G0172 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 5.7e-08 62.0 104 35.6
vmacro20279 Vaccinium macrocarpon HOM05D002957 ORTHO05D009332 9.7e-08 61.2 125 30.4
Actinidia11584 Actinidia chinensis HOM05D002957 ORTHO05D009332 1.3e-07 60.8 125 30.4
Cre02.g111450 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 2.8e-07 59.7 148 27.7
Lj1g0008226 Lotus japonicus HOM05D006381 ORTHO05D008523 2.8e-07 59.7 106 32.1
Eucgr.K02980 Eucalyptus grandis HOM05D002957 ORTHO05D009332 1.1e-06 57.8 106 30.2
THA.LOC104823296 Tarenaya hassleriana HOM05D002957 ORTHO05D009332 1.1e-06 57.8 115 33.9
DCAR_024020 Daucus carota HOM05D002957 ORTHO05D009332 1.4e-06 57.4 114 28.9
Sed0015308 Sechium edule HOM05D006381 ORTHO05D008523 1.8e-06 57.0 94 31.9
Aqoxy2G00881 Aquilegia oxysepala HOM05D002957 ORTHO05D009332 2.4e-06 56.6 106 30.2
MELO3C009019.2 Cucumis melo HOM05D006381 ORTHO05D008523 2.4e-06 56.6 130 28.5
PGR004G1270 Punica granatum HOM05D002957 ORTHO05D009332 3.1e-06 56.2 106 31.1
AL3G19920 Arabidopsis lyrata HOM05D002957 ORTHO05D009332 4.1e-06 55.8 106 32.1
BcaC05g29625 Brassica carinata HOM05D002957 ORTHO05D009332 4.1e-06 55.8 106 32.1
A05p39930 Brassica napus HOM05D002957 ORTHO05D009332 4.1e-06 55.8 106 32.1
C05p58970 Brassica napus HOM05D002957 ORTHO05D009332 4.1e-06 55.8 106 32.1
Ca_08505_v3 Cicer arietinum L. HOM05D006381 ORTHO05D008523 4.1e-06 55.8 106 31.1
PSO339G4196 Papaver somniferum HOM05D002957 ORTHO05D009332 4.1e-06 55.8 106 26.4
CSS0035001 Camellia sinensis var. sinensis HOM05D002957 ORTHO05D009332 5.3e-06 55.5 114 28.1
Dinv23112 Davidia involucrata HOM05D002957 ORTHO05D009332 5.3e-06 55.5 106 27.4
Duzib093G1669 Durio zibethinus HOM05D001743 ORTHO05D001685 5.3e-06 55.5 82 36.6
CsaV3_4G031300 Cucumis sativus L. HOM05D006381 ORTHO05D008523 6.9e-06 55.1 130 28.5


User provided reference genes

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