Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 4.1e-179 631.3 334 100.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.3e-176 621.7 334 98.8
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-173 613.2 332 96.4
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 7.6e-173 610.5 332 96.7
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.8e-167 592.0 333 95.5
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.8e-156 555.1 340 86.5
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.0e-149 532.7 340 83.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.8e-142 509.6 341 80.4
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.3e-140 503.4 342 79.8
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.9e-139 499.6 343 79.3
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.2e-139 498.8 338 79.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 5.5e-139 498.0 340 80.9
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.9e-138 494.2 344 78.2
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 4.8e-135 485.0 338 78.7
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 4.8e-135 485.0 338 78.7
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-134 483.4 340 80.6
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.5e-133 479.9 340 78.8
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.9e-121 438.7 332 74.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.8e-119 432.6 340 70.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.0e-117 426.4 332 71.7
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.5e-117 425.2 333 71.2
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 6.5e-116 421.4 333 71.5
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 8.5e-116 421.0 333 71.5
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 6.1e-114 414.8 337 70.3
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.6e-112 409.5 333 68.8
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.3e-111 404.8 342 67.3
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-110 403.3 333 69.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.8e-110 403.3 333 69.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.2e-109 400.6 333 69.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-108 396.0 333 69.1
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.5e-107 393.7 345 65.5
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.3e-103 378.3 335 65.1
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.0e-100 370.9 337 61.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.3e-100 370.5 345 60.6
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.6e-98 362.5 345 59.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.0e-98 361.3 346 59.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.0e-97 360.9 347 59.1
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.8e-97 360.1 350 60.3
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-97 360.1 337 59.9
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.0e-97 359.0 347 58.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.2e-97 358.6 346 59.0
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 5.2e-97 358.6 347 58.2
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 6.8e-97 358.2 346 58.7
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 6.8e-97 358.2 325 61.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.5e-96 357.1 342 61.4
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.0e-96 356.7 347 59.1
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.6e-96 356.3 346 60.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.7e-96 355.1 345 59.4
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 9.8e-96 354.4 345 59.4
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 9.8e-96 354.4 353 56.7
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.8e-95 352.8 347 58.8
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.7e-95 352.4 358 57.0
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 6.3e-95 351.7 347 57.6
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.1e-94 350.9 345 58.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.7e-93 346.3 346 57.5
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.7e-92 343.6 352 57.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.8e-92 342.4 345 58.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.5e-91 340.5 346 56.6
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.5e-91 339.7 345 58.3
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.5e-91 339.7 326 58.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.5e-91 339.7 345 58.8
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 7.2e-91 338.2 345 58.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.2e-91 338.2 337 58.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 7.2e-91 338.2 350 56.6
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.2e-90 337.4 324 59.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.0e-89 334.3 343 58.6
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-89 334.0 345 58.3
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 3.0e-89 332.8 346 56.6
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 3.0e-89 332.8 347 56.5
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 5.2e-89 332.0 346 56.6
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 8.8e-89 331.3 345 58.0
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 4.4e-88 328.9 346 55.8
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.7e-88 328.6 335 59.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.8e-87 326.2 346 54.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.8e-87 326.2 345 55.4
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.9e-87 325.5 390 51.5
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 6.3e-87 325.1 407 51.4
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.4e-86 323.9 346 55.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.8e-86 323.6 346 55.2
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 3.1e-86 322.8 343 56.3
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 7.0e-86 321.6 325 58.2
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 7.0e-86 321.6 343 54.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 9.2e-86 321.2 345 55.7
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.6e-85 320.5 329 57.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.7e-85 319.7 346 55.8
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.5e-85 318.9 326 58.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.9e-85 318.5 356 53.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.0e-84 317.8 348 54.0
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.3e-84 316.6 348 57.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.9e-84 316.2 345 56.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 5.0e-84 315.5 346 56.1
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.1e-83 314.3 325 57.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 1.5e-83 313.9 333 57.4
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.5e-83 313.9 415 49.2
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 5.6e-83 312.0 341 55.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.6e-83 312.0 350 54.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 9.5e-83 311.2 346 52.6
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.2e-82 310.8 325 56.6
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.1e-82 310.1 325 57.8
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.1e-82 310.1 317 59.6
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 8.0e-82 308.1 336 56.8
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.0e-81 307.8 349 54.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 2.3e-81 306.6 324 56.2
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.2e-81 305.4 337 54.3
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.4e-80 302.8 322 55.9
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 9.8e-80 301.2 392 50.0
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.7e-79 300.4 325 56.9
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.2e-79 300.1 335 51.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.7e-79 299.3 339 58.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-79 299.3 324 56.2
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.9e-79 298.9 357 53.8
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 6.4e-79 298.5 327 56.3
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 6.4e-79 298.5 350 53.1
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 4.1e-78 295.8 336 54.8
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.4e-78 295.4 349 53.3
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 9.2e-78 294.7 350 52.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.0e-76 291.2 288 57.3
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.0e-76 289.7 346 51.4
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.9e-76 289.3 347 52.2
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 6.6e-76 288.5 347 51.3
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.6e-76 288.5 347 51.3
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.5e-75 286.6 344 51.2
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 5.6e-75 285.4 337 52.5
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.4e-73 280.8 325 52.3
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.8e-73 280.4 194 78.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 5.2e-73 278.9 283 55.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.2e-72 277.7 345 50.7
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.6e-72 276.6 259 62.9
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.3e-71 274.2 342 49.1
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.2e-71 273.5 334 51.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.7e-71 272.7 347 48.7
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.0e-68 264.6 326 51.5
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.0e-68 264.6 347 47.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.9e-68 262.7 242 60.3
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.0e-68 262.3 342 47.7
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 5.0e-68 262.3 243 63.0
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 4.3e-67 259.2 346 48.8
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 7.3e-67 258.5 335 47.8
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 6.2e-66 255.4 336 47.3
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 5.8e-64 248.8 344 48.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 6.4e-63 245.4 348 46.8
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 7.1e-62 241.9 348 45.7
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.1e-59 234.6 255 55.3
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 9.5e-59 231.5 325 48.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.4e-48 196.1 237 48.9
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-41 174.9 342 40.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 9.3e-30 135.2 386 30.3
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.6e-29 134.4 249 38.2
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.3e-27 126.7 334 31.7
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 4.0e-25 119.8 140 51.4
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.2e-18 95.5 157 43.9
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 5.9e-16 89.4 119 45.4
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.1e-13 79.3 155 38.7
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.4e-09 68.2 200 31.5
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.1e-09 67.0 59 59.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 8.5e-07 58.9 205 24.9
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.1e-06 58.5 343 24.8
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 3.2e-06 57.0 153 34.6


User provided reference genes

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