Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 0.0e+00 1354.3 702 100.0
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 0.0e+00 1297.3 713 95.0
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 0.0e+00 1272.3 703 93.7
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 0.0e+00 1271.9 703 93.6
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 0.0e+00 1099.0 704 83.2
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 2.5e-287 991.9 726 75.1
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 4.8e-254 881.3 732 66.7
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 3.1e-253 878.6 718 68.9
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 2.0e-252 875.9 729 65.8
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 1.8e-240 836.3 722 62.9
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 2.0e-212 743.0 809 56.4
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 1.4e-176 624.0 788 51.4
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 4.3e-101 373.2 771 36.7
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 1.5e-98 364.8 757 35.7
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 1.3e-97 361.7 732 36.6
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 1.6e-95 354.8 760 36.4
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 6.0e-95 352.8 802 34.8
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 1.1e-93 348.6 804 35.0
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 7.3e-93 345.9 778 34.7
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 6.2e-92 342.8 717 36.4
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 8.1e-92 342.4 781 35.1
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 4.0e-91 340.1 722 35.5
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 5.2e-91 339.7 718 36.6
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 5.8e-90 336.3 792 34.1
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 1.7e-89 334.7 777 35.1
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 7.1e-88 329.3 728 33.8
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 1.7e-86 324.7 478 43.7
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 3.3e-85 320.5 761 34.7
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 8.1e-84 315.8 741 31.7
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 5.2e-83 313.2 794 32.9
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 5.2e-83 313.2 695 34.4
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 1.4e-80 305.1 787 33.0
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 4.2e-80 303.5 723 33.7
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 1.3e-78 298.5 747 31.9
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 3.0e-78 297.4 801 33.3
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 5.1e-78 296.6 476 41.6
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 2.8e-76 290.8 762 30.6
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.1e-75 288.9 787 32.9
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.4e-75 287.7 788 33.0
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 6.9e-75 286.2 781 32.7
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 6.9e-75 286.2 758 32.3
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 2.0e-74 284.6 653 34.8
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 2.6e-74 284.3 809 32.0
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.3e-73 282.0 781 32.8
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 6.4e-73 279.6 784 32.8
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 2.4e-72 277.7 716 31.4
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 1.7e-70 271.6 762 32.8
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 5.1e-70 270.0 547 36.0
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 1.6e-68 265.0 785 32.0
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 1.8e-67 261.5 790 30.5
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 1.5e-66 258.5 794 30.9
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 2.0e-66 258.1 767 31.3
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 2.9e-65 254.2 746 31.1
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 2.4e-64 251.1 706 31.3
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 7.1e-64 249.6 668 32.2
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 3.0e-62 244.2 758 30.7
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 3.0e-62 244.2 764 29.6
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 2.5e-61 241.1 755 30.9
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 5.6e-61 240.0 614 32.7
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 9.6e-61 239.2 717 30.4
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 4.8e-60 236.9 736 30.2
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 1.1e-59 235.7 698 31.2
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 7.6e-58 229.6 773 29.0
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 9.9e-58 229.2 609 31.7
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 2.9e-57 227.6 720 30.1
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 2.9e-57 227.6 664 30.1
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 1.4e-56 225.3 621 32.2
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 4.2e-56 223.8 543 32.2
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 7.1e-56 223.0 782 30.3
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 9.3e-56 222.6 718 29.5
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 2.1e-55 221.5 740 28.5
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 2.1e-55 221.5 609 32.3
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 6.0e-55 219.9 563 33.2
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 1.8e-54 218.4 544 33.5
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 2.1e-52 211.5 621 30.1
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 4.8e-52 210.3 617 32.7
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 3.1e-51 207.6 517 33.3
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 1.2e-50 205.7 627 31.1
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 1.3e-49 202.2 773 28.5
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 5.5e-48 196.8 753 28.2
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.6e-47 195.3 602 30.2
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 6.0e-47 193.4 719 26.8
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 6.7e-46 189.9 667 28.2
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.4e-43 182.2 517 29.4
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 1.2e-42 179.1 707 27.6
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 2.0e-42 178.3 728 27.1
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 2.9e-41 174.5 644 28.0
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 6.5e-41 173.3 673 27.9
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 2.7e-39 167.9 723 28.2
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 9.1e-35 152.9 733 25.2
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 2.0e-34 151.8 524 31.5
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 1.7e-33 148.7 332 34.3
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 1.7e-33 148.7 614 27.2
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 2.2e-33 148.3 587 26.4
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 3.2e-32 144.4 523 30.2
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 4.2e-32 144.1 522 29.9
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 1.6e-31 142.1 523 30.0
BcaB04g17382 Brassica carinata HOM05D006728 ORTHO05D007911 4.1e-27 127.5 115 61.7
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 1.2e-18 99.4 230 33.5
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 4.2e-16 90.9 629 23.5
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 9.4e-16 89.7 649 21.7
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 2.7e-15 88.2 391 28.9
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 8.0e-15 86.7 115 47.0
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 4.0e-14 84.3 286 29.4
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 7.0e-11 73.6 121 40.5
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 7.0e-11 73.6 132 37.1
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 1.9e-08 65.5 611 20.3
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 2.5e-08 65.1 68 47.1
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 1.2e-07 62.8 272 28.3
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 2.7e-07 61.6 115 36.5
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 1.4e-06 59.3 85 42.4
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 1.8e-06 58.9 155 31.6


User provided reference genes

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