Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 6.2e-160 567.4 283 100.0
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 6.2e-160 567.4 283 100.0
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 7.1e-156 553.9 283 98.2
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 7.1e-156 553.9 283 98.2
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.3e-154 549.7 283 97.2
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 3.7e-152 541.6 284 96.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 4.9e-149 531.2 275 97.1
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-147 526.6 284 93.0
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 1.2e-147 526.6 284 93.0
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 8.2e-144 513.8 283 90.8
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 7.6e-142 507.3 283 90.5
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.3e-140 500.4 284 90.5
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.3e-138 496.5 284 89.1
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.5e-137 493.0 283 87.3
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 5.7e-137 491.1 284 88.4
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 3.3e-129 465.3 284 83.1
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 4.5e-126 454.9 285 78.9
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 5.9e-126 454.5 284 81.0
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 7.7e-126 454.1 284 80.3
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.3e-125 453.4 285 78.9
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.3e-125 453.4 284 78.5
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.7e-125 453.0 284 79.6
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.7e-125 453.0 284 79.6
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 5.0e-125 451.4 284 80.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.4e-124 449.9 284 80.3
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 2.5e-124 449.1 284 78.9
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 2.5e-124 449.1 284 79.6
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 5.5e-124 448.0 284 79.2
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-123 446.0 284 79.2
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-123 445.3 284 78.5
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 3.6e-123 445.3 284 78.5
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.5e-121 439.9 290 75.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 4.8e-120 434.9 277 79.8
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 6.5e-117 424.5 277 76.2
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 8.2e-104 380.9 283 65.0
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 7.7e-102 374.4 289 64.0
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.3e-101 373.6 285 63.5
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-101 373.6 285 63.5
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.5e-100 370.2 283 63.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.6e-99 366.7 283 61.5
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.7e-99 365.9 283 64.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-99 365.5 283 64.3
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.0e-99 364.4 283 64.3
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.0e-99 364.4 283 64.3
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.4e-98 363.6 287 63.1
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 4.0e-98 362.1 287 61.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.2e-97 360.5 283 63.3
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.4e-97 358.6 285 60.7
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 5.7e-97 358.2 283 60.8
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 7.5e-97 357.8 287 63.8
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 7.5e-97 357.8 284 62.7
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 9.8e-97 357.5 288 62.8
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 9.8e-97 357.5 285 60.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.7e-96 356.7 286 60.5
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 2.2e-96 356.3 280 61.8
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.2e-96 356.3 280 61.4
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 3.7e-96 355.5 286 59.4
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 3.7e-96 355.5 283 62.9
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 4.8e-96 355.1 283 61.5
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 6.3e-96 354.8 289 62.6
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.1e-95 354.0 279 62.0
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.1e-95 354.0 289 61.6
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.4e-95 353.6 287 58.5
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.8e-95 353.2 284 60.9
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.4e-95 352.8 286 60.5
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.1e-95 352.4 286 60.1
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.4e-95 351.7 287 58.5
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 7.0e-95 351.3 283 60.1
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 7.0e-95 351.3 285 61.8
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-94 350.5 287 59.9
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.6e-94 350.1 285 62.1
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.6e-94 350.1 290 58.6
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 2.0e-94 349.7 285 61.4
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 2.0e-94 349.7 281 59.8
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 3.5e-94 349.0 287 59.9
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.5e-94 349.0 285 61.8
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 4.5e-94 348.6 288 59.0
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 7.7e-94 347.8 280 59.6
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.0e-93 347.4 284 61.3
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.3e-93 346.3 288 59.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 3.8e-93 345.5 285 61.4
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 5.0e-93 345.1 285 59.3
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 8.6e-93 344.4 283 58.3
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.1e-92 344.0 286 58.0
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.5e-92 343.6 283 59.7
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.5e-92 343.6 289 59.9
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.5e-92 343.6 245 65.3
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.5e-92 343.6 284 58.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.5e-92 343.6 291 61.5
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.9e-92 343.2 284 58.8
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 3.3e-92 342.4 279 59.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 3.3e-92 342.4 284 57.7
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 4.2e-92 342.0 284 58.8
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 5.5e-92 341.7 292 58.9
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 7.2e-92 341.3 284 60.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.2e-92 341.3 285 59.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 7.2e-92 341.3 283 58.7
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.6e-91 340.1 288 57.6
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.1e-91 339.7 245 64.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 2.8e-91 339.3 283 58.3
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.0e-90 337.4 283 57.2
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.4e-90 337.0 290 59.3
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.8e-90 336.7 284 58.8
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 3.0e-90 335.9 283 58.0
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 5.2e-90 335.1 245 63.7
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.8e-90 334.7 290 58.3
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 6.8e-90 334.7 284 58.8
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 6.8e-90 334.7 283 59.4
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.2e-89 334.0 284 57.0
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.0e-89 333.2 283 58.0
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.4e-89 332.4 290 57.9
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 5.7e-89 331.6 290 56.9
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 9.8e-89 330.9 284 58.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.8e-89 330.9 244 64.8
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 2.8e-88 329.3 283 58.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 4.9e-88 328.6 285 57.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 8.3e-88 327.8 283 59.0
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.8e-87 326.6 289 55.7
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.6e-86 323.6 283 55.5
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.0e-86 323.2 314 53.8
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.0e-86 323.2 283 56.9
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 3.5e-86 322.4 248 60.1
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 3.5e-86 322.4 248 60.1
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.5e-86 322.4 289 55.7
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 4.5e-86 322.0 287 55.4
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.3e-85 320.5 284 55.6
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.3e-85 319.7 245 63.3
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 3.8e-85 318.9 283 55.1
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 5.0e-85 318.5 285 58.6
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.1e-84 317.4 302 53.0
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.1e-84 317.4 241 61.8
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 4.3e-84 315.5 284 54.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.2e-83 313.9 285 55.1
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 1.6e-83 313.5 245 60.0
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.6e-83 313.5 286 56.3
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.0e-82 310.8 283 54.4
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.3e-82 309.7 283 56.2
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.0e-81 306.6 283 53.7
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.8e-81 305.1 285 56.5
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.9e-80 302.8 285 56.1
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 6.4e-80 301.6 283 52.7
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.8e-79 300.1 257 59.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.5e-76 290.4 285 51.2
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 6.8e-74 281.6 262 53.8
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 9.8e-73 277.7 184 70.7
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.4e-71 273.9 233 55.8
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.2e-70 270.8 284 50.0
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 7.3e-68 261.5 254 53.1
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 6.2e-67 258.5 197 60.9
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.9e-64 248.8 249 48.6
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 5.2e-58 228.8 253 45.8
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.2e-57 227.6 243 46.1
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 6.4e-56 221.9 185 56.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 7.1e-55 218.4 244 44.3
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 4.6e-54 215.7 142 77.5
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-53 213.8 142 76.8
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-53 213.8 142 76.8
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 3.9e-53 212.6 113 92.9
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.4e-49 199.5 193 52.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 7.3e-44 181.8 165 55.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.1e-42 177.9 185 55.1
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 1.4e-42 177.6 166 51.8
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.4e-42 177.6 167 54.5
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 9.9e-41 171.4 213 45.5
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.9e-39 167.2 214 40.7
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 4.2e-39 166.0 241 35.7
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-25 121.3 74 83.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-18 97.8 126 38.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.1e-14 84.0 191 32.5


User provided reference genes

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