Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 8.1e-42 173.3 88 100.0
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 3.9e-28 127.9 67 98.5
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.1e-25 119.8 62 100.0
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 3.1e-25 118.2 62 98.4
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 3.1e-25 118.2 62 98.4
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 3.1e-25 118.2 62 98.4
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 6.9e-25 117.1 62 96.8
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 6.9e-25 117.1 62 96.8
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.2e-24 116.3 62 96.8
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.0e-24 115.5 62 95.2
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 3.4e-24 114.8 60 96.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 4.5e-24 114.4 64 90.6
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.2e-23 112.1 62 93.5
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.2e-23 112.1 62 93.5
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 5.5e-22 107.5 62 88.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 7.1e-22 107.1 57 94.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.5e-19 98.6 61 78.7
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 9.7e-19 96.7 60 78.3
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.6e-18 95.9 61 73.8
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.8e-18 95.1 61 73.8
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.7e-18 94.7 61 73.8
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.8e-17 92.4 64 70.3
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.8e-17 92.4 64 70.3
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.1e-17 91.7 61 73.8
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.1e-17 91.7 62 67.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 3.1e-17 91.7 62 74.2
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 4.1e-17 91.3 60 73.3
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.1e-17 91.3 62 72.6
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.1e-17 91.3 62 72.6
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 9.0e-17 90.1 62 71.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.2e-16 89.7 61 72.1
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-16 89.4 61 72.1
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.6e-16 88.6 61 68.9
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.6e-16 88.6 61 67.2
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.4e-16 88.2 61 68.9
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.4e-16 88.2 62 69.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.4e-16 88.2 61 70.5
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 4.5e-16 87.8 64 67.2
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.7e-15 85.9 57 70.2
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.7e-15 85.9 60 68.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.2e-15 85.5 59 71.2
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 6.5e-15 84.0 61 68.9
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 4.2e-14 81.3 60 65.0
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.5e-14 80.9 60 63.3
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 9.4e-14 80.1 60 65.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 9.4e-14 80.1 60 65.0
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.6e-13 79.3 60 61.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.6e-13 79.3 60 63.3
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.6e-13 79.3 60 61.7
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 4.6e-13 77.8 60 61.7
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 6.1e-13 77.4 60 61.7
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 6.1e-13 77.4 60 61.7
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 6.1e-13 77.4 60 61.7
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.0e-12 76.6 54 64.8
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.4e-12 76.3 61 54.1
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.4e-12 76.3 60 56.7
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.3e-12 75.5 53 62.3
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 3.9e-12 74.7 60 61.7
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.9e-12 74.7 62 58.1
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.1e-12 74.3 53 60.4
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.1e-11 73.2 60 60.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.5e-11 72.0 60 56.7
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.5e-11 72.0 61 55.7
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 3.3e-11 71.6 64 59.4
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.3e-11 71.2 62 56.5
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 4.3e-11 71.2 60 56.7
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 4.3e-11 71.2 55 61.8
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 7.4e-11 70.5 62 53.2
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 7.4e-11 70.5 55 58.2
CARHR049680 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.3e-10 69.7 44 81.8
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.7e-10 69.3 55 56.4
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.7e-10 69.3 53 56.6
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 2.2e-10 68.9 57 57.9
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.7e-10 68.2 55 58.2
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 3.7e-10 68.2 53 58.5
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 4.8e-10 67.8 60 53.3
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.3e-10 67.4 56 57.1
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.4e-09 66.2 60 55.0
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.4e-09 65.5 49 63.3
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 3.1e-09 65.1 53 56.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 3.1e-09 65.1 53 56.6
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 5.3e-09 64.3 53 56.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 5.3e-09 64.3 53 56.6
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 5.3e-09 64.3 43 65.1
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 5.3e-09 64.3 53 56.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 6.9e-09 63.9 53 56.6
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 6.9e-09 63.9 47 66.0
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 9.1e-09 63.5 53 54.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.5e-08 62.8 53 56.6
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 2.0e-08 62.4 54 59.3
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 2.0e-08 62.4 53 58.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.4e-08 61.6 57 50.9
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 4.5e-08 61.2 61 47.5
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.9e-08 60.8 57 54.4
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 7.7e-08 60.5 56 51.8
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.0e-07 60.1 53 52.8
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 1.0e-07 60.1 57 50.9
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.3e-07 59.7 53 50.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.3e-07 59.7 53 54.7
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.7e-07 59.3 43 65.1
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 2.9e-07 58.5 59 49.2
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.8e-07 58.2 53 47.2
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.8e-07 58.2 53 47.2
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.5e-07 57.4 53 52.8
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.5e-07 57.4 53 47.2
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 1.1e-06 56.6 53 47.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.4e-06 56.2 53 47.2
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 2.5e-06 55.5 53 49.1
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.5e-06 54.3 53 49.1
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 5.5e-06 54.3 56 48.2


User provided reference genes

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