Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 2240.3 1145 100.0
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 0.0e+00 2209.5 1149 98.7
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 2160.2 1161 95.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 0.0e+00 2160.2 1161 95.9
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 0.0e+00 1900.6 1170 84.4
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 0.0e+00 1806.2 1183 80.7
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 0.0e+00 1797.7 1172 81.2
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 0.0e+00 1771.9 1168 80.0
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 0.0e+00 1687.5 1169 77.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1447.6 1151 68.9
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 0.0e+00 1402.9 1145 67.9
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1140.2 1155 55.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1121.3 1164 52.0
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1118.2 1177 52.7
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1114.8 1192 52.2
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1104.7 1188 51.6
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1103.2 1194 51.4
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1100.1 1173 53.2
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1094.3 1191 52.2
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1093.2 1193 51.9
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1090.1 1172 51.7
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1088.2 1160 52.8
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1086.6 1177 51.3
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 7.8e-312 1074.7 1182 51.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.9e-308 1062.8 1177 50.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 2.8e-307 1058.9 1193 50.4
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.5e-305 1053.1 1172 51.6
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.3e-304 1050.0 1156 51.3
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 6.3e-304 1047.7 1177 50.1
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 6.3e-304 1047.7 1131 52.6
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 4.1e-303 1045.0 1200 49.8
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 3.5e-294 1015.4 1201 50.0
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 3.6e-291 1005.4 1127 50.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 1.3e-288 996.9 1187 48.7
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 3.7e-288 995.3 1184 49.7
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 4.1e-287 991.9 1204 49.3
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 7.0e-287 991.1 1194 48.1
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.8e-283 979.2 1181 47.2
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 6.2e-283 978.0 1198 48.1
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 8.1e-283 977.6 1159 48.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 7.5e-281 971.1 1199 46.5
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 3.5e-278 962.2 1152 48.7
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 6.0e-278 961.4 1208 47.1
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 5.6e-276 954.9 1175 47.1
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 9.5e-276 954.1 1194 47.8
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 2.8e-275 952.6 1192 46.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 6.8e-274 948.0 1184 47.7
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 9.9e-273 944.1 1198 45.8
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 2.2e-272 943.0 1186 47.2
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.0e-269 934.1 1092 49.1
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 3.0e-269 932.6 1328 43.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.8e-264 915.6 1185 45.7
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.8e-259 898.7 1186 45.8
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.4e-258 897.1 1326 42.7
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 1.4e-255 887.1 1181 43.9
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 7.1e-255 884.8 859 56.1
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 9.3e-255 884.4 1146 45.6
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.3e-253 879.8 983 49.4
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 6.7e-253 878.2 1189 44.0
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 4.3e-252 875.5 1127 46.7
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 5.3e-250 868.6 1170 44.4
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.0e-249 866.7 1238 42.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.9e-247 860.1 1073 47.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.9e-247 860.1 1073 46.9
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.3e-245 854.0 1180 44.0
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 3.0e-245 852.8 1318 40.4
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 1.8e-242 843.6 1092 45.4
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 2.5e-236 823.2 1077 45.0
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.1e-234 815.8 1209 41.4
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 6.1e-230 802.0 1213 42.2
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.4e-228 795.0 1118 44.5
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.1e-226 789.3 1078 44.2
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 2.3e-221 773.5 835 51.6
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.1e-218 764.6 1155 41.6
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.3e-218 762.3 1077 43.8
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.1e-210 734.9 488 79.1
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.0e-205 721.5 1205 40.0
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.2e-198 698.0 899 47.1
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.1e-198 697.2 976 44.2
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.7e-187 661.0 838 45.6
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.2e-185 654.8 869 45.6
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 3.5e-169 600.1 655 49.6
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 3.0e-160 570.5 944 38.6
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.6e-158 564.7 591 54.3
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 6.8e-157 559.3 927 38.6
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 8.9e-157 558.9 1098 36.0
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.4e-156 557.0 1131 33.1
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 8.1e-150 535.8 486 58.4
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.9e-146 524.6 588 50.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.2e-137 495.4 560 48.6
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 4.5e-132 476.9 762 38.8
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.6e-129 468.4 670 41.8
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.4e-125 455.3 552 47.6
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 6.1e-121 439.9 582 45.4
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.4e-114 418.7 551 46.1
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.8e-112 411.8 250 84.4
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 2.8e-110 404.4 538 46.5
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 4.8e-110 403.7 1126 30.5
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.1e-85 322.8 500 42.0
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.7e-84 318.2 754 30.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 2.3e-75 288.5 262 59.5
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.2e-73 282.7 362 45.6
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.0e-67 260.8 889 28.8
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 9.5e-66 256.5 452 40.7
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 7.5e-55 220.3 423 35.5
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.0e-51 208.4 123 85.4
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.1e-51 207.6 174 62.1
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 7.3e-50 203.8 255 44.3
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.0e-43 183.3 577 30.0
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 6.8e-40 170.6 170 56.5
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.4e-37 162.9 170 53.5
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.6e-36 157.9 241 41.9
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.0e-36 157.5 145 60.7
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.3e-35 156.4 231 43.7
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.0e-35 155.2 347 32.6
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.3e-34 150.6 241 40.7
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.4e-32 146.4 231 41.1
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 1.9e-26 125.9 101 67.3
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 4.8e-25 121.3 1163 20.5
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 9.0e-24 117.1 170 43.5
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.2e-23 116.7 62 87.1
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.4e-23 115.2 77 74.0
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.8e-23 114.4 83 69.9
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.1e-20 105.9 95 56.8
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.0e-20 104.4 73 69.9
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 8.7e-19 100.5 71 71.8
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.9e-18 99.4 135 42.2
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.3e-17 96.7 61 80.3
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 2.8e-17 95.5 97 49.5
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.4e-16 93.2 97 48.5
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 5.3e-16 91.3 357 25.8
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.0e-15 89.4 179 33.5
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.9e-14 84.7 98 49.0
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.9e-13 82.8 112 42.9
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.2e-13 81.6 122 40.2
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 8.7e-11 73.9 71 57.7
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.7e-10 71.2 57 54.4
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.1e-09 69.3 79 44.3
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.1e-09 69.3 79 44.3
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.7e-09 68.6 65 60.0
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.7e-09 68.6 96 44.8
CARHR046170 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.2e-09 67.4 46 73.9
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.2e-07 63.5 92 43.5


User provided reference genes

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