Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 4.3e-231 804.3 402 100.0
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 3.0e-216 755.0 389 97.2
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 3.1e-197 691.8 392 89.3
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.4e-194 682.9 382 90.8
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 1.5e-191 672.9 382 87.7
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 3.6e-185 651.7 385 87.3
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 3.8e-155 552.0 389 74.3
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 2.6e-135 486.1 419 64.9
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.4e-133 479.6 434 61.8
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 9.2e-133 477.6 433 60.7
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 4.4e-119 432.2 438 55.3
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 8.1e-113 411.4 443 52.4
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 5.1e-91 339.0 382 50.5
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.0e-86 324.7 388 49.2
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.0e-86 324.7 419 46.1
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 1.0e-86 324.7 454 42.3
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 1.3e-86 324.3 440 42.5
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 3.8e-86 322.8 439 45.8
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 3.8e-86 322.8 465 43.7
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 4.9e-86 322.4 451 43.9
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 4.9e-86 322.4 449 42.5
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 1.4e-85 320.9 428 43.2
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 3.2e-85 319.7 444 43.5
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.2e-85 319.7 430 45.1
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 4.2e-85 319.3 429 44.8
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 5.5e-85 318.9 434 43.5
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.1e-84 317.0 439 42.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 2.7e-84 316.6 420 46.2
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.7e-84 316.6 429 43.4
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 4.6e-84 315.8 393 46.1
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 6.0e-84 315.5 373 46.4
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.3e-83 314.3 441 42.9
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 3.0e-83 313.2 465 41.3
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 6.7e-83 312.0 440 42.3
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 8.7e-83 311.6 430 42.8
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.5e-82 310.8 445 41.1
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 4.3e-82 309.3 444 43.0
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 5.7e-82 308.9 443 43.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 2.1e-81 307.0 432 43.1
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.1e-80 303.1 442 42.1
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 5.3e-80 302.4 429 43.6
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 5.3e-80 302.4 429 43.6
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 5.3e-80 302.4 429 43.6
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 6.9e-80 302.0 412 44.7
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 9.0e-80 301.6 470 39.1
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 5.9e-79 298.9 450 42.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.0e-78 298.1 418 41.9
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 8.5e-78 295.0 445 42.0
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 7.2e-77 292.0 393 46.1
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 7.2e-77 292.0 413 42.1
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 1.6e-76 290.8 451 39.9
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.1e-76 290.4 435 41.6
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 3.6e-76 289.7 456 40.6
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 2.3e-75 287.0 483 37.9
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 1.1e-74 284.6 439 41.0
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.5e-74 284.3 423 40.2
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 3.7e-73 279.6 464 39.9
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 4.8e-73 279.3 436 41.3
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 6.3e-73 278.9 442 39.1
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 3.1e-72 276.6 444 40.3
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 5.3e-72 275.8 415 41.7
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 6.9e-72 275.4 451 39.2
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 2.0e-71 273.9 434 38.9
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.3e-70 271.2 437 42.3
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.9e-70 270.0 429 39.4
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 6.5e-70 268.9 430 39.5
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 2.5e-69 266.9 475 36.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.2e-69 266.5 429 39.9
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.2e-68 264.6 165 74.5
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.2e-68 264.6 428 38.6
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 2.1e-68 263.8 405 41.5
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 3.6e-68 263.1 387 40.3
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 3.6e-68 263.1 416 40.6
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 4.6e-68 262.7 426 37.3
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 1.0e-67 261.5 426 38.3
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 1.0e-67 261.5 434 38.2
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 6.7e-67 258.8 437 37.5
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 4.4e-66 256.1 448 37.9
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 2.4e-64 250.4 393 39.2
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.5e-63 247.7 476 34.7
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 4.2e-61 239.6 425 38.6
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.1e-58 231.5 412 37.1
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.0e-55 220.7 395 37.5
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.0e-54 218.4 259 47.5
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 1.5e-53 214.5 542 29.5
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.9e-53 214.2 194 52.1
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.5e-53 213.8 227 48.9
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.2e-52 211.5 235 54.0
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.6e-52 211.1 431 34.1
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.0e-50 204.1 224 48.2
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.7e-49 201.1 222 47.7
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 1.3e-46 191.4 404 32.7
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 6.5e-46 189.1 451 34.4
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.5e-45 188.0 138 58.0
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.5e-45 187.2 164 64.0
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.7e-44 183.7 459 30.3
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.8e-43 181.0 322 40.7
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.3e-43 180.6 132 57.6
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 2.3e-43 180.6 370 35.1
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.3e-41 174.9 137 57.7
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.9e-39 166.0 333 37.2
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 4.2e-37 159.8 130 55.4
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 5.5e-37 159.5 490 26.7
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 9.5e-37 158.7 317 37.2
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.4e-35 154.8 125 57.6
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 6.8e-35 152.5 189 41.8
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 6.8e-35 152.5 189 41.8
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.8e-32 144.4 187 40.6
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 3.8e-30 136.7 180 45.6
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 5.0e-30 136.3 166 48.8
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.5e-29 134.8 160 48.1
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.5e-29 134.0 214 40.2
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.3e-29 133.3 160 48.1
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 5.6e-29 132.9 161 47.2
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 3.6e-28 130.2 117 47.9
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.8e-27 127.9 278 34.9
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 5.7e-26 122.9 143 49.7
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 9.8e-26 122.1 171 43.9
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.4e-24 118.2 134 40.3
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.9e-22 110.2 166 44.0
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 9.5e-21 105.5 157 40.1
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 6.2e-20 102.8 153 41.2
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 6.2e-20 102.8 145 33.1
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.2e-18 98.6 121 43.8
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 4.4e-18 96.7 115 48.7
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.5e-18 95.9 92 50.0
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-17 94.7 175 40.0
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 2.4e-16 90.9 267 30.7
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.5e-13 81.6 115 42.6
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 3.3e-13 80.5 172 34.9
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 8.3e-09 65.9 49 61.2
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 8.3e-09 65.9 206 31.1
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 7.8e-07 59.3 71 40.8
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.3e-06 57.8 143 31.5


User provided reference genes

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