Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.4e-170 602.1 300 100.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 4.6e-169 597.8 300 99.3
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 8.0e-166 587.0 300 98.0
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 9.2e-154 547.0 300 92.7
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-147 526.2 288 89.2
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 9.9e-132 473.8 235 99.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.5e-119 433.3 230 90.4
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.0e-117 425.2 271 74.5
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.5e-116 423.3 257 77.8
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.5e-116 423.3 262 76.0
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 4.9e-115 418.3 286 70.6
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-114 416.0 262 75.2
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 4.2e-114 415.2 262 75.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.2e-114 415.2 255 76.5
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-113 413.7 262 75.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.0e-112 410.6 256 76.2
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.0e-112 410.6 255 75.7
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 9.4e-98 360.9 258 64.7
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.7e-97 359.4 203 88.2
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.0e-96 355.9 297 57.9
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.8e-96 354.4 301 57.1
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.5e-95 352.8 302 57.3
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 4.3e-95 352.1 295 58.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.4e-95 351.3 297 57.2
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 7.4e-95 351.3 296 57.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-94 350.5 295 57.6
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.3e-94 350.5 295 58.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 3.7e-94 349.0 258 62.8
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 3.7e-94 349.0 258 62.8
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 3.7e-94 349.0 258 62.8
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 4.8e-94 348.6 260 63.8
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.1e-93 347.4 295 56.6
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.3e-93 345.1 258 61.6
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.4e-92 342.4 265 60.0
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.0e-91 340.9 255 61.6
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.3e-91 340.5 271 60.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.9e-91 339.3 258 61.6
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.0e-91 338.6 265 60.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.5e-91 338.2 292 57.2
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.5e-91 337.8 256 61.3
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.4e-90 337.0 269 58.4
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 2.5e-90 336.3 254 63.0
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.6e-89 333.6 253 62.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 4.7e-89 332.0 302 54.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.8e-88 330.1 266 57.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.3e-88 329.7 255 60.4
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.0e-88 329.3 271 58.3
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 3.9e-88 328.9 256 60.5
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 5.1e-88 328.6 296 54.4
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.1e-88 328.6 266 58.3
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 5.1e-88 328.6 256 60.2
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.1e-87 327.4 266 59.8
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 1.1e-87 327.4 294 55.8
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.1e-87 327.4 276 55.4
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.0e-87 326.6 272 58.1
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.0e-87 326.6 275 60.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 3.3e-87 325.9 269 58.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 4.4e-87 325.5 256 59.8
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.7e-87 325.1 259 59.5
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 7.4e-87 324.7 266 57.9
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 7.4e-87 324.7 266 57.9
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.3e-86 323.9 271 56.8
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.7e-86 323.6 258 58.5
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.7e-86 323.6 258 59.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.7e-86 323.6 259 60.2
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.7e-86 323.6 277 57.8
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.2e-86 323.2 288 55.6
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.2e-86 323.2 276 56.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.2e-86 323.2 256 60.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.7e-86 322.4 263 59.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 4.8e-86 322.0 255 58.4
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 4.8e-86 322.0 255 58.4
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 6.3e-86 321.6 288 54.5
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 6.3e-86 321.6 270 54.8
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 6.3e-86 321.6 257 58.8
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 8.2e-86 321.2 256 57.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 8.2e-86 321.2 264 56.1
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 8.2e-86 321.2 257 59.1
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.4e-85 320.5 264 56.1
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.4e-85 320.5 267 58.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.4e-85 320.5 290 53.8
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.4e-85 320.5 255 58.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.8e-85 320.1 255 60.0
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.1e-85 318.9 253 57.7
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.1e-85 318.9 270 54.8
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.3e-85 318.5 257 58.8
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 7.0e-85 318.2 262 57.3
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 7.0e-85 318.2 259 56.8
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.0e-84 316.6 264 56.1
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 5.9e-84 315.1 287 53.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.0e-83 314.3 264 58.3
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.7e-83 313.5 268 56.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.9e-83 312.8 269 55.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-82 310.8 229 63.3
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.5e-82 308.5 254 56.3
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.2e-82 308.1 272 55.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.0e-80 304.3 259 57.1
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.4e-80 303.9 263 55.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.8e-80 301.2 256 55.1
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.3e-79 299.3 181 76.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.2e-78 296.6 266 53.0
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.7e-78 295.8 260 56.2
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 6.3e-78 295.0 234 57.3
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 3.1e-77 292.7 273 53.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 9.1e-77 291.2 262 52.3
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.0e-76 290.0 263 53.6
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.7e-75 287.0 301 48.2
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.2e-75 286.6 254 51.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 6.5e-75 285.0 280 51.8
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 6.5e-75 285.0 295 47.5
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.5e-75 284.6 254 52.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-74 283.9 255 52.9
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-74 283.9 255 52.9
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 7.2e-74 281.6 263 50.6
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.7e-73 279.6 166 77.7
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 6.1e-73 278.5 214 61.2
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 5.7e-71 271.9 257 51.4
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.1e-69 267.7 257 49.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-69 266.9 261 49.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-69 266.9 261 49.4
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 5.4e-69 265.4 231 54.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.5e-68 262.3 217 56.2
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 7.7e-68 261.5 260 48.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 7.7e-68 261.5 260 48.8
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.0e-67 261.2 268 50.7
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 8.5e-67 258.1 214 56.1
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 8.5e-67 258.1 256 52.7
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.2e-66 255.0 218 55.0
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.6e-65 253.8 280 46.4
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.7e-65 252.3 147 79.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-64 250.8 216 54.2
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 3.4e-63 246.1 173 67.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 8.3e-62 241.5 191 59.7
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.4e-61 240.7 247 49.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.2e-60 237.7 253 49.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.5e-60 235.7 181 60.2
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-56 224.2 269 46.1
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.7e-52 209.9 163 58.3
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-51 208.0 263 42.2
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-51 207.6 263 42.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 5.2e-48 195.7 272 43.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.5e-44 183.0 399 32.3
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.3e-43 181.0 253 41.9
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 2.3e-43 180.3 166 52.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.5e-42 177.6 237 41.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.9e-37 160.6 109 72.5
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.3e-35 153.7 125 57.6
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.3e-32 143.7 236 36.0
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 8.9e-32 141.7 112 58.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-30 137.9 237 36.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 6.6e-27 125.6 113 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.5e-26 123.6 220 35.0
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.8e-24 117.5 67 85.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.2e-23 114.8 118 44.9
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 2.1e-20 104.0 185 34.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.5e-20 103.2 214 30.4
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.3e-18 96.7 199 34.7
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.6e-18 95.9 116 44.0
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.8e-17 93.6 184 32.1
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.2e-17 92.4 71 57.7
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.9e-14 83.6 86 47.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 9.3e-13 78.6 65 52.3
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.8e-11 74.3 60 66.7
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-11 72.4 70 47.1
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.6e-09 66.6 65 53.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.4e-08 64.7 47 61.7
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.8e-08 64.3 63 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.2e-07 61.6 272 24.3
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.5e-07 61.2 66 43.9
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.6e-07 60.5 58 51.7


User provided reference genes

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