Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 5.5e-54 214.2 116 100.0
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 2.2e-50 202.2 117 95.7
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.8e-49 199.1 117 94.9
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.8e-49 199.1 117 94.9
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.8e-49 199.1 117 94.9
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.0e-44 181.8 116 79.3
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.8e-42 175.3 116 74.1
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 9.1e-41 170.2 116 84.5
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 4.2e-38 161.4 120 72.5
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 5.5e-38 161.0 119 72.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.6e-35 152.1 120 76.7
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.4e-33 145.6 119 69.7
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 5.5e-30 134.4 122 68.0
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 5.2e-20 101.3 115 47.8
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.5e-16 88.6 117 43.6
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.2e-14 82.0 126 44.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.2e-14 81.6 111 45.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 7.2e-14 80.9 121 43.8
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-13 79.7 121 40.5
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.7e-13 79.0 117 40.2
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.7e-13 79.0 124 41.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.7e-13 78.2 115 40.9
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 6.1e-13 77.8 118 39.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.1e-13 77.8 120 40.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 6.1e-13 77.8 120 40.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 8.0e-13 77.4 121 40.5
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 8.0e-13 77.4 120 40.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.0e-12 77.0 117 43.6
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.4e-12 76.6 117 41.9
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-12 75.9 118 42.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.3e-12 75.9 114 40.4
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.0e-12 75.5 122 40.2
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.8e-12 74.3 110 39.1
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 8.8e-12 73.9 110 39.1
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-11 73.2 113 38.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.0e-11 72.8 110 41.8
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.6e-11 72.4 121 43.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.6e-11 72.4 116 41.4
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.4e-11 72.0 121 41.3
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.4e-11 72.0 111 41.4
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 4.4e-11 71.6 110 40.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.7e-11 71.2 119 38.7
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 5.7e-11 71.2 114 40.4
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 7.5e-11 70.9 120 40.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 7.5e-11 70.9 112 39.3
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-10 70.1 118 37.3
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.7e-10 69.7 123 39.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.2e-10 69.3 125 40.0
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.8e-10 68.9 119 37.8
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 4.8e-10 68.2 112 38.4
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 4.8e-10 68.2 130 36.9
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 6.3e-10 67.8 110 38.2
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.3e-10 67.8 118 36.4
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.4e-09 66.6 121 35.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.4e-09 65.9 110 40.9
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.1e-09 65.5 119 37.0
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.1e-09 65.5 113 36.3
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.1e-09 65.5 113 36.3
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.1e-09 65.5 116 37.1
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.1e-09 65.5 116 37.1
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.1e-09 65.1 121 38.0
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.0e-09 64.3 128 37.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.0e-08 62.8 120 36.7
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.7e-08 62.4 108 38.0
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.5e-08 62.0 115 40.9
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.5e-08 61.6 110 37.3
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.5e-08 61.6 114 40.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.9e-08 61.2 118 39.8
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.7e-08 60.8 110 36.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 7.7e-08 60.8 109 40.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-07 60.5 121 37.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.7e-07 59.7 120 36.7
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.3e-07 59.3 120 37.5
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.9e-07 58.9 120 35.0
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 2.9e-07 58.9 117 35.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.9e-07 58.9 112 33.9
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.8e-07 58.5 117 33.3
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.8e-07 58.5 108 38.0
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 5.0e-07 58.2 118 35.6
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 5.0e-07 58.2 129 45.7
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.6e-07 57.8 119 34.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 6.6e-07 57.8 122 38.5
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 8.6e-07 57.4 137 41.6
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.1e-06 57.0 118 44.9
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.9e-06 56.2 125 44.0
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.5e-06 55.8 117 35.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.3e-06 55.5 110 31.8
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.3e-06 55.5 110 31.8
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 3.3e-06 55.5 121 46.3
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 4.2e-06 55.1 111 33.3
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 5.5e-06 54.7 111 40.5
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 5.5e-06 54.7 122 45.9
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 7.2e-06 54.3 115 34.8


User provided reference genes

Program Settings