Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1543.9 774 100.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 0.0e+00 1520.8 781 98.0
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 0.0e+00 1519.2 774 98.3
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1509.6 785 96.8
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 0.0e+00 1484.9 799 94.2
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1386.3 777 90.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1371.3 777 88.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 0.0e+00 1362.1 777 89.4
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1360.1 777 88.7
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 0.0e+00 1353.6 777 88.2
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 0.0e+00 1348.6 777 87.4
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 0.0e+00 1319.7 776 84.5
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1270.4 774 81.9
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 777 70.1
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 777 70.1
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1083.9 779 68.9
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1083.2 772 70.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1082.8 769 69.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1081.6 771 70.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 5.3e-312 1073.9 773 69.5
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.6e-311 1071.6 778 68.8
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 1.1e-310 1069.7 777 68.3
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.8e-310 1068.9 781 69.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.8e-310 1068.9 772 68.7
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.6e-309 1065.1 777 68.3
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 7.6e-309 1063.5 772 68.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 7.6e-309 1063.5 777 68.5
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.3e-308 1062.8 795 67.3
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 2.2e-308 1062.0 777 68.2
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 776 67.7
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.5e-306 1054.7 779 68.2
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 787 67.6
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 3.3e-304 1048.1 782 66.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 5.6e-304 1047.3 777 66.7
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 9.6e-304 1046.6 774 67.6
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 9.6e-304 1046.6 772 67.4
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.4e-302 1042.0 773 67.8
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.9e-299 1032.3 771 66.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.9e-299 1032.3 777 66.4
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 2.4e-299 1031.9 772 66.1
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 7.8e-298 1026.9 782 64.3
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 7.3e-296 1020.4 777 66.4
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 9.6e-296 1020.0 768 65.5
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.3e-295 1019.6 779 65.3
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.1e-295 1016.9 772 66.3
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.4e-294 1016.1 751 68.2
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 1.2e-293 1013.1 807 62.3
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 2.6e-293 1011.9 776 64.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 874 60.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 6.0e-290 1000.7 763 65.9
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-289 999.2 774 64.7
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 6.6e-289 997.3 776 63.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 8.7e-289 996.9 772 65.0
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 8.7e-289 996.9 776 64.0
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.3e-288 993.8 782 63.2
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 2.8e-287 991.9 772 64.6
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 4.8e-287 991.1 773 63.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 4.8e-287 991.1 863 59.2
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.2e-284 982.2 771 64.3
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 3.0e-281 971.8 777 63.3
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.8e-278 962.6 777 63.1
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.8e-278 962.6 776 62.1
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 9.0e-278 960.3 772 63.5
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.2e-277 959.9 776 62.0
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-276 956.4 498 97.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.7e-276 956.1 777 62.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.9e-276 955.3 773 63.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.1e-275 953.4 775 61.0
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.9e-275 952.6 781 63.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.5e-275 952.2 775 60.9
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.2e-275 951.8 778 60.8
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 7.1e-275 950.7 836 58.5
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 9.3e-275 950.3 780 61.5
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.3e-273 945.7 736 65.9
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 3.3e-272 941.8 773 62.1
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.3e-271 939.9 780 60.6
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.6e-271 939.5 771 61.5
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.1e-267 926.8 777 60.1
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 4.6e-266 921.4 595 81.2
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 6.7e-265 917.5 720 65.3
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 8.7e-265 917.1 877 55.6
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 5.9e-261 904.4 778 59.5
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.0e-253 879.4 746 58.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.0e-252 877.1 785 58.1
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.2e-247 859.4 778 55.9
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 4.2e-243 845.1 790 55.1
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 3.0e-241 839.0 777 55.5
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.1e-238 830.5 777 57.1
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.7e-213 746.1 775 49.8
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 4.1e-198 695.7 538 65.6
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 6.8e-193 678.3 529 65.0
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.0e-180 637.9 780 46.2
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.1e-179 634.4 480 66.5
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-171 607.8 426 69.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 7.4e-155 552.0 797 41.2
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.4e-150 537.7 791 40.3
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.1e-140 502.7 404 63.4
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 3.7e-138 496.5 440 64.8
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 3.0e-132 476.9 445 62.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.9e-132 476.5 514 49.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.5e-120 436.8 506 50.2
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 8.0e-117 425.6 380 63.9
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 4.2e-110 403.3 749 34.8
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 6.3e-106 389.4 844 31.0
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.9e-95 353.6 378 50.3
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-83 314.7 256 61.3
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 5.1e-79 300.1 181 74.0
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 8.1e-77 292.7 265 54.0
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-73 280.8 184 76.1
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.6e-69 268.5 392 38.3
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.5e-67 261.9 226 58.4
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.9e-57 228.4 763 26.5
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.3e-46 190.7 174 62.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-42 179.5 228 43.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 2.1e-40 171.8 320 35.0
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 5.3e-36 157.1 252 38.1
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 3.4e-35 154.5 459 25.7
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 2.9e-34 151.4 121 60.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 6.7e-31 140.2 507 25.4
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.1e-30 139.4 164 50.0
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.8e-29 134.8 85 72.9
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.4e-28 132.5 86 72.1
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.6e-27 128.3 102 63.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.7e-27 126.7 87 65.5
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 7.7e-27 126.7 512 23.4
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-26 125.6 84 71.4
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.9e-26 124.8 108 50.9
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.8e-26 124.4 87 65.5
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-25 121.3 120 52.5
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 4.2e-25 120.9 108 50.0
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.2e-25 120.2 84 70.2
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.6e-24 117.9 105 50.5
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.3e-23 115.2 87 60.9
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.8e-23 113.2 75 69.3
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 3.7e-21 107.8 56 80.4
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.8e-21 107.5 62 80.6
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 2.0e-19 102.1 52 88.5
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 3.4e-19 101.3 153 41.2
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 9.4e-17 93.2 52 78.8
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 9.4e-17 93.2 72 56.9
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 2.7e-16 91.7 137 43.1
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.0e-15 88.2 62 69.4
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.0e-14 85.5 55 65.5
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.1e-12 79.7 175 31.4
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-12 79.3 87 51.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.1e-12 77.8 55 65.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.1e-12 77.8 55 65.5
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-10 72.4 55 54.5
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.8e-10 71.2 73 46.6
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.8e-10 71.2 83 42.2
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-08 65.5 72 47.2
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.7e-08 64.3 87 40.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 31 90.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-07 63.2 46 65.2


User provided reference genes

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