Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 9.5e-223 776.5 400 100.0
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 3.5e-217 758.1 400 98.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 9.6e-215 750.0 400 97.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 6.2e-214 747.3 400 97.2
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-213 745.7 400 97.2
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 2.7e-209 731.9 401 95.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 9.9e-196 686.8 400 88.8
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.5e-191 672.9 404 86.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 6.5e-187 657.5 405 84.2
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.5e-186 655.6 404 84.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 4.3e-183 644.8 404 83.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.3e-183 644.8 403 83.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.1e-173 611.7 405 80.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.5e-148 528.9 402 69.4
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.0e-127 459.9 407 61.2
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 3.7e-126 455.7 374 65.8
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 6.4e-126 454.9 396 62.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.1e-125 454.1 394 61.7
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.4e-125 453.8 374 64.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.2e-125 452.6 410 61.5
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 5.4e-125 451.8 388 61.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 7.0e-125 451.4 387 64.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.0e-125 451.4 371 63.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.6e-124 450.3 400 60.2
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.0e-124 449.9 406 62.1
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.0e-124 449.9 407 59.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.3e-123 446.4 366 63.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 3.0e-123 446.0 354 63.6
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.9e-123 445.7 411 60.6
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.9e-123 445.7 396 61.4
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 5.0e-123 445.3 358 65.6
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 5.0e-123 445.3 394 61.9
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 6.6e-123 444.9 359 64.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.1e-122 444.1 373 62.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.9e-122 443.4 392 61.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 4.3e-122 442.2 360 64.7
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.6e-122 441.8 378 62.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.2e-121 440.7 392 61.2
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-121 440.7 362 64.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.6e-121 440.3 358 64.5
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.1e-121 439.9 381 60.9
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.7e-121 438.7 366 62.6
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 6.2e-121 438.3 366 63.1
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 8.0e-121 438.0 379 63.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.3e-120 436.4 355 64.2
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 4.0e-120 435.6 369 63.4
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-120 435.3 383 60.6
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-120 435.3 383 60.6
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 5.2e-120 435.3 366 64.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 8.9e-120 434.5 366 62.3
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 8.9e-120 434.5 379 62.0
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.2e-119 434.1 437 57.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-119 434.1 386 60.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.4e-119 432.6 387 60.2
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.4e-119 432.6 386 60.6
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 4.4e-119 432.2 417 58.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 7.5e-119 431.4 394 59.9
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.3e-118 430.6 366 61.5
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.7e-118 430.3 388 60.8
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.7e-118 430.3 352 62.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.2e-118 429.9 356 62.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.2e-118 429.9 355 63.7
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.9e-118 429.5 393 60.8
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 8.3e-118 427.9 418 57.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.3e-118 427.9 388 59.5
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.1e-117 427.6 368 62.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.4e-117 427.2 407 58.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.4e-117 427.2 358 63.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.9e-117 426.8 362 62.4
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.4e-117 426.4 381 61.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.4e-117 425.2 388 58.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.4e-117 425.2 392 58.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.2e-116 424.1 424 56.8
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.2e-116 424.1 371 61.5
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.2e-116 424.1 402 58.2
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.2e-116 424.1 388 58.5
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.6e-116 423.7 360 61.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.5e-116 422.5 361 62.6
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 7.8e-116 421.4 383 57.7
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.7e-115 420.2 421 55.3
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.9e-115 419.1 371 59.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.0e-115 418.7 387 57.1
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-114 417.5 389 58.6
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.9e-114 416.8 397 57.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.3e-114 416.0 386 58.3
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 4.3e-114 415.6 367 59.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.6e-114 415.2 287 72.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.1e-113 413.3 371 60.6
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.1e-113 413.3 390 58.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.6e-113 412.5 409 55.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.7e-113 412.1 339 63.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.1e-113 411.4 287 72.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 6.8e-112 408.3 379 60.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.3e-110 404.1 400 54.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.1e-109 401.0 287 70.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.1e-109 401.0 360 58.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.2e-109 399.4 389 57.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.2e-109 399.4 375 57.1
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 7.1e-109 398.3 403 57.3
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.6e-108 397.1 367 59.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.6e-108 397.1 370 59.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.6e-108 397.1 358 58.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.1e-108 396.7 370 60.3
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.1e-108 396.7 355 60.3
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.7e-108 396.4 302 67.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.3e-107 393.3 370 60.0
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.3e-107 393.3 370 60.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.9e-107 392.5 414 53.6
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 3.9e-107 392.5 406 54.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.5e-106 389.8 370 56.2
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.3e-106 389.4 382 57.9
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.3e-106 389.0 370 59.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-106 388.7 370 59.5
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 5.6e-106 388.7 370 59.5
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 5.6e-106 388.7 366 56.0
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.3e-106 388.3 384 57.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-105 386.7 384 57.6
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.1e-105 386.7 374 58.6
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 3.1e-104 382.9 356 57.9
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 5.2e-104 382.1 367 58.6
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 5.2e-104 382.1 393 55.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 5.2e-104 382.1 354 54.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.6e-103 379.8 373 57.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.3e-102 377.5 363 57.3
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.9e-102 375.6 286 67.1
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 8.4e-102 374.8 365 58.4
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.2e-101 371.3 356 56.7
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.9e-99 365.9 290 60.0
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.2e-97 360.9 283 63.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.8e-97 359.8 369 55.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.8e-97 359.8 363 52.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.2e-94 350.1 492 43.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.4e-88 330.9 285 61.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.8e-88 330.5 421 47.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.0e-87 327.0 285 61.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.6e-84 315.8 251 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 7.9e-84 315.1 368 47.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.9e-84 315.1 246 64.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-67 261.2 197 66.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 7.4e-58 228.8 291 40.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 9.0e-56 221.9 295 41.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.6e-52 209.9 171 64.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-51 208.4 155 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.0e-38 165.2 256 41.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.0e-27 128.6 246 37.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.8e-25 120.6 189 40.7
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 3.2e-21 107.1 110 53.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 4.2e-21 106.7 174 40.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.8e-20 104.0 283 27.9
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 5.7e-18 96.3 140 42.9
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.9e-15 86.3 53 75.5
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 7.8e-15 85.9 69 62.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 4.9e-09 66.6 112 35.7


User provided reference genes

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