Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 4.5e-98 361.7 244 100.0
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 2.3e-94 349.4 244 93.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 2.3e-94 349.4 244 93.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 2.3e-94 349.4 244 93.0
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 5.8e-90 334.7 250 91.2
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 5.3e-83 311.6 234 91.5
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 4.2e-80 302.0 246 85.8
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 7.2e-80 301.2 244 85.7
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.6e-79 298.9 250 84.8
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 7.9e-79 297.7 244 85.2
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 4.3e-77 292.0 245 83.7
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 4.8e-76 288.5 245 81.2
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-74 283.9 245 84.5
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.0e-73 280.8 244 79.5
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 2.9e-73 279.3 244 77.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.1e-72 277.3 244 77.9
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 6.1e-71 271.6 181 87.3
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 1.8e-70 270.0 244 73.8
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.5e-58 228.8 247 65.2
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.7e-49 200.3 178 70.8
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 4.2e-48 195.7 148 70.9
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 8.0e-47 191.4 148 66.9
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.4e-46 190.7 152 65.8
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 5.2e-46 188.7 148 66.9
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 1.3e-44 184.1 133 73.7
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.7e-44 183.7 186 57.5
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.7e-44 183.7 196 54.1
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 8.3e-44 181.4 144 65.3
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.1e-43 181.0 146 65.8
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 3.1e-43 179.5 185 57.8
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 5.4e-43 178.7 191 57.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.2e-42 177.6 150 66.0
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 2.7e-42 176.4 148 62.2
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 4.5e-42 175.6 151 62.9
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 4.5e-42 175.6 140 70.0
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 4.5e-42 175.6 200 53.5
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 5.9e-42 175.3 137 67.2
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 1.0e-41 174.5 149 65.1
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.7e-41 173.7 148 64.9
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.7e-41 173.7 196 57.1
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.3e-41 173.3 142 64.8
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.3e-41 173.3 151 63.6
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.8e-41 172.6 138 63.0
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 5.0e-41 172.2 148 63.5
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 6.6e-41 171.8 196 54.6
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 6.6e-41 171.8 140 63.6
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 6.6e-41 171.8 140 63.6
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 6.6e-41 171.8 144 64.6
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-40 171.0 209 55.0
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-40 171.0 209 55.0
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.1e-40 171.0 178 56.2
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-40 170.6 203 55.7
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-40 170.6 203 55.7
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.5e-40 170.6 203 55.7
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.5e-40 170.6 141 64.5
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.9e-40 170.2 135 65.2
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 3.3e-40 169.5 153 66.7
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 3.3e-40 169.5 153 66.7
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 3.3e-40 169.5 176 55.1
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 3.3e-40 169.5 188 55.3
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 4.2e-40 169.1 140 62.9
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 4.2e-40 169.1 130 67.7
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 5.5e-40 168.7 209 54.5
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 7.2e-40 168.3 133 66.9
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 9.5e-40 167.9 202 51.5
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 1.6e-39 167.2 147 62.6
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.6e-39 167.2 146 61.0
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.1e-39 166.8 184 52.7
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.6e-39 166.0 135 64.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.6e-39 166.0 255 56.5
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.6e-39 166.0 255 56.5
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 4.7e-39 165.6 205 56.1
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 6.1e-39 165.2 133 63.2
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 1.0e-38 164.5 145 57.2
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.0e-38 164.5 150 58.7
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.8e-38 163.7 244 48.4
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.0e-38 162.9 149 59.1
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.2e-38 162.2 134 65.7
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 5.2e-38 162.2 148 60.8
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.0e-37 160.2 148 57.4
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.6e-37 159.8 135 62.2
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 3.4e-37 159.5 153 63.4
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 5.7e-37 158.7 142 60.6
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 7.5e-37 158.3 152 59.9
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.5e-37 158.3 152 59.9
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 9.8e-37 157.9 132 63.6
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.3e-36 157.5 241 46.5
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.3e-36 157.5 135 60.7
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.2e-36 156.8 152 59.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 2.8e-36 156.4 148 56.8
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.7e-36 156.0 152 59.2
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 3.7e-36 156.0 152 59.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 3.7e-36 156.0 181 50.3
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 4.9e-36 155.6 140 57.1
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 6.3e-36 155.2 151 55.0
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 6.3e-36 155.2 179 53.6
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 6.3e-36 155.2 251 44.2
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 8.3e-36 154.8 150 58.7
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.4e-35 153.3 150 54.0
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.1e-35 152.9 142 59.9
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 3.1e-35 152.9 130 60.8
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 4.1e-35 152.5 175 50.9
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 7.0e-35 151.8 149 57.0
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 9.2e-35 151.4 130 61.5
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.2e-34 151.0 130 62.3
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 1.6e-34 150.6 145 57.9
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 2.7e-34 149.8 183 56.3
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 3.5e-34 149.4 130 60.0
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 4.5e-34 149.1 131 61.1
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.8e-34 148.3 135 60.0
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 7.8e-34 148.3 153 60.1
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.7e-33 147.1 138 56.5
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.7e-33 147.1 130 57.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.7e-33 147.1 126 61.1
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 2.3e-33 146.7 135 58.5
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.9e-33 146.4 134 60.4
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.1e-32 144.4 152 57.2
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 4.3e-32 142.5 205 52.2
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 5.6e-32 142.1 213 50.7
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 7.3e-32 141.7 153 53.6
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.2e-31 141.0 153 53.6
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.4e-30 137.5 133 57.9
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 4.4e-29 132.5 130 54.6
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.8e-29 131.3 143 53.8
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.7e-28 129.4 138 50.7
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.9e-27 127.1 135 52.6
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.3e-25 120.9 197 49.7
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.9e-25 119.4 135 51.1
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.0e-25 119.0 104 61.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 4.3e-24 115.9 146 50.0
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 6.2e-23 112.1 131 51.9
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 2.0e-21 107.1 142 47.2
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.2e-20 103.6 109 53.2
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 6.4e-20 102.1 110 52.7
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.6e-15 86.3 67 67.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 3.1e-14 83.2 128 46.9
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.4e-12 75.5 135 40.7
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 3.3e-08 63.2 69 58.0
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 1.4e-06 57.8 106 46.2
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 3.1e-06 56.6 106 46.2


User provided reference genes

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