Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.4e-287 990.7 550 100.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.7e-281 970.7 550 98.2
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-279 965.7 550 97.1
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.9e-277 958.7 554 96.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-274 949.5 554 93.5
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-265 917.5 562 86.1
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 5.8e-263 910.6 554 92.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 5.3e-256 887.5 571 83.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 9.0e-256 886.7 569 84.4
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.2e-254 882.1 570 81.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 8.4e-254 880.2 571 82.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 8.4e-254 880.2 571 82.5
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.4e-253 879.4 570 85.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-253 879.0 571 83.5
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.2e-253 877.9 571 82.3
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.3e-251 872.8 569 81.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-250 869.4 566 81.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-248 863.2 569 80.1
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.1e-248 861.7 554 85.0
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-243 844.7 565 79.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.5e-242 842.0 570 78.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 8.2e-241 837.0 569 78.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-233 812.0 565 77.3
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.1e-232 808.5 573 73.8
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-226 790.0 531 79.5
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-213 746.9 402 95.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 7.0e-208 727.6 551 69.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 5.5e-205 718.0 556 67.6
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 3.6e-204 715.3 551 67.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 6.1e-204 714.5 552 66.8
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.3e-203 712.6 554 67.0
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.4e-202 708.4 552 66.7
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.7e-202 708.0 549 67.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 7.5e-202 707.6 552 67.0
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.2e-201 706.1 553 66.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.2e-201 706.1 564 65.8
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.8e-201 704.9 553 66.4
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 8.3e-201 704.1 563 64.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 8.3e-201 704.1 550 66.0
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.3e-198 696.8 384 91.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.9e-198 695.7 556 66.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.1e-197 693.7 545 66.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 4.2e-197 691.8 552 71.2
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.7e-196 688.3 548 69.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.0e-195 685.3 551 69.0
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.5e-194 683.3 548 64.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.7e-193 679.9 557 63.6
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.2e-193 679.5 557 63.9
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 8.3e-193 677.6 552 63.8
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.3e-193 677.6 559 63.5
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.6e-191 673.3 550 64.5
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.0e-190 670.6 552 63.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-190 670.6 551 63.3
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-190 670.6 551 63.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.3e-190 670.2 561 64.2
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 5.0e-190 668.3 555 62.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 8.6e-190 667.5 564 61.9
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.5e-189 666.8 547 62.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.5e-189 666.0 553 64.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 4.3e-189 665.2 553 62.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 9.5e-189 664.1 548 62.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-188 663.7 557 64.1
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-188 663.7 486 70.2
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.6e-188 663.3 545 63.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.8e-188 662.5 558 63.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.3e-187 659.4 554 65.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 3.0e-187 659.1 558 63.3
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.6e-186 656.0 561 63.8
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 7.5e-186 654.4 559 63.3
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.8e-186 654.1 551 63.3
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.8e-186 654.1 551 63.3
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.3e-185 653.7 557 62.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.9e-185 652.5 561 62.2
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.9e-185 651.7 548 61.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 6.4e-185 651.4 574 59.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-184 650.2 556 61.9
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.8e-184 649.8 550 62.4
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-184 649.8 529 63.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.0e-184 647.9 554 63.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.8e-183 644.4 561 61.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.3e-182 643.7 556 60.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.5e-181 639.4 548 60.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.3e-181 638.6 433 73.2
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 2.8e-180 636.0 556 61.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 6.2e-180 634.8 553 62.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 8.0e-180 634.4 561 60.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.5e-178 627.9 514 63.2
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.7e-177 626.7 552 62.5
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 8.3e-177 624.4 549 62.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 5.4e-176 621.7 549 61.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 7.0e-176 621.3 546 59.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.7e-175 619.4 435 68.5
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 7.8e-175 617.8 550 59.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.7e-174 616.7 547 59.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.5e-173 613.6 548 60.8
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 3.3e-173 612.5 552 59.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-172 610.5 558 57.2
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.6e-172 609.0 431 68.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.0e-171 605.5 551 59.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.2e-170 604.0 553 58.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 5.8e-170 601.7 548 58.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 9.9e-170 600.9 472 75.6
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-168 597.4 413 71.4
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.1e-168 594.7 435 68.7
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-165 587.4 554 59.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 3.3e-165 585.9 435 65.5
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.6e-164 583.6 554 59.7
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 6.2e-164 581.6 547 57.8
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 6.8e-163 578.2 560 55.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.7e-161 573.5 579 54.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.3e-158 563.1 553 57.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-157 560.8 557 57.6
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-154 550.8 563 55.2
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.9e-153 545.4 558 56.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 7.8e-151 538.1 580 56.0
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-150 537.3 339 75.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.9e-149 533.5 549 55.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.6e-148 529.3 561 54.4
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.9e-147 525.0 551 53.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 6.2e-140 501.9 554 51.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-139 500.4 556 53.1
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.2e-136 489.6 537 52.5
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.2e-132 474.9 302 74.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.4e-131 474.2 505 50.5
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.2e-130 471.1 544 51.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.7e-124 449.5 431 50.6
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.1e-101 374.8 365 50.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-95 354.4 395 52.4
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.5e-88 329.3 391 49.9
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.4e-86 324.7 495 43.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-85 321.2 311 59.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-83 313.9 199 73.9
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.9e-76 289.7 256 60.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.9e-74 282.7 359 46.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-73 281.2 211 63.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-61 241.5 156 73.1
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.7e-55 219.9 191 56.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.3e-48 197.2 267 49.1
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.3e-40 170.6 169 60.9
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.8e-38 164.9 206 52.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.1e-34 151.4 289 37.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.5e-32 144.4 488 26.8
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-27 129.0 92 65.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-27 128.6 93 64.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.5e-20 103.2 152 45.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.5e-19 100.1 181 30.9
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.3e-17 95.5 79 58.2
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.9e-17 94.0 116 45.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-15 89.0 51 82.4
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-15 88.6 71 59.2
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-15 88.6 70 60.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-15 87.4 71 57.7
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-13 81.6 78 55.1
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 3.8e-12 77.4 74 55.4
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.7e-09 66.6 131 38.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.8e-07 61.2 64 46.9


User provided reference genes

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