Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-124 448.4 235 100.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.5e-124 448.4 235 95.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.6e-116 422.9 235 91.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.6e-113 412.9 235 88.9
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-113 412.9 235 88.9
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.1e-107 391.3 234 82.9
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-106 389.8 234 82.9
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.1e-105 386.0 235 83.0
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 3.1e-104 382.1 201 94.0
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.1e-104 382.1 235 81.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 6.8e-104 380.9 235 81.7
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.4e-101 373.2 235 80.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.4e-101 373.2 235 81.3
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 9.3e-101 370.5 235 80.4
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 9.3e-101 370.5 235 80.4
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.3e-99 366.7 235 78.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 2.3e-99 365.9 235 78.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.9e-98 362.8 204 88.7
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 5.6e-98 361.3 202 89.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.5e-95 353.2 235 75.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.9e-94 349.0 234 75.2
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.4e-85 319.3 201 76.6
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.4e-85 319.3 236 69.9
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.2e-85 318.9 236 69.9
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 7.1e-85 317.8 235 68.5
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.1e-85 317.8 229 70.3
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.0e-84 314.7 236 69.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-83 313.5 237 67.5
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.3e-83 312.8 203 77.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.0e-83 312.4 203 76.8
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 5.1e-83 311.6 201 78.6
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 6.7e-83 311.2 218 70.2
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 8.7e-83 310.8 235 68.9
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.5e-82 309.3 230 71.3
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 7.4e-82 307.8 236 68.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.6e-82 307.4 237 67.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-81 307.0 202 75.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.6e-81 306.6 232 69.4
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.1e-81 306.2 202 73.8
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.8e-81 305.1 202 74.3
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.2e-81 304.7 259 62.2
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-80 303.1 235 65.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-80 303.1 235 65.1
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 4.0e-80 302.0 202 73.3
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.0e-80 302.0 203 74.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.3e-80 301.6 203 74.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 9.0e-80 300.8 221 68.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.0e-80 300.8 200 75.5
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-79 300.4 201 73.1
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.2e-79 300.4 205 74.6
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.6e-79 299.3 202 74.3
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.6e-79 299.3 200 75.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-78 297.0 206 72.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.3e-78 297.0 203 75.4
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.7e-78 296.6 206 72.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.7e-78 296.6 240 64.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.7e-78 296.6 202 72.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.2e-78 296.2 206 72.3
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 2.2e-78 296.2 202 73.3
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.2e-78 296.2 227 66.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.8e-78 295.4 202 72.3
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 4.9e-78 295.0 207 70.5
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.5e-78 294.7 203 73.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.5e-78 294.7 203 73.4
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-78 294.3 222 68.9
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 8.4e-78 294.3 209 73.7
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.4e-77 293.5 236 64.8
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.9e-77 293.1 221 67.4
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.9e-77 293.1 202 71.3
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.5e-77 292.7 202 71.8
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 3.2e-77 292.4 202 71.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 4.2e-77 292.0 233 65.7
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.2e-77 292.0 202 71.8
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.1e-77 291.2 202 71.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 9.3e-77 290.8 259 61.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-76 290.4 202 71.8
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.0e-76 288.1 202 72.3
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 7.9e-76 287.7 202 72.3
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.3e-75 287.0 236 62.7
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.8e-75 286.6 236 62.3
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 2.3e-75 286.2 237 62.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.9e-75 285.4 201 71.6
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 5.1e-75 285.0 202 70.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 5.1e-75 285.0 202 71.8
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 8.7e-75 284.3 220 66.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.5e-74 283.5 201 70.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.9e-74 283.1 218 64.2
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.9e-74 283.1 202 71.3
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 9.6e-74 280.8 242 61.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 9.6e-74 280.8 242 61.6
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-73 280.4 208 67.3
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.1e-73 279.6 203 68.0
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 3.7e-73 278.9 202 68.8
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 8.2e-73 277.7 203 68.0
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.4e-72 276.2 204 67.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.4e-72 276.2 199 69.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.1e-72 275.4 217 64.5
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.3e-72 275.0 196 68.9
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 5.3e-72 275.0 201 68.7
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 6.9e-72 274.6 203 70.4
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 9.0e-72 274.2 202 67.3
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.5e-71 273.5 202 65.3
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.4e-71 272.3 257 59.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.4e-71 272.3 232 61.2
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.3e-70 270.4 223 65.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.7e-70 270.0 203 67.5
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-70 269.6 232 60.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.9e-70 269.2 174 74.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.1e-69 267.3 205 63.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-69 266.9 201 67.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.5e-69 266.2 203 66.0
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 7.2e-69 264.6 201 64.7
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-68 262.3 209 65.6
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.3e-67 259.6 168 77.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 5.1e-67 258.5 236 60.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.1e-64 250.8 187 65.8
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-64 250.4 162 75.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.8e-64 250.0 236 57.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.1e-64 248.8 238 56.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.1e-64 248.8 294 48.0
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-62 244.2 159 73.6
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.3e-62 243.8 170 70.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 8.5e-62 241.1 231 58.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.5e-58 230.3 209 56.9
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.7e-57 226.9 214 57.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.8e-57 225.3 210 59.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.8e-56 223.4 200 59.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.1e-56 222.2 214 56.1
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 4.5e-55 218.8 119 84.9
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.9e-55 218.4 174 58.6
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.2e-54 216.5 201 59.2
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.8e-54 215.7 185 58.4
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 8.5e-54 214.5 196 59.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.7e-52 208.8 154 66.9
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 6.1e-52 208.4 119 82.4
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.4e-51 207.2 214 50.5
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-50 202.6 145 71.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 7.4e-50 201.4 104 93.3
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.4e-50 201.4 116 79.3
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 4.5e-47 192.2 150 67.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.1e-45 187.6 142 68.3
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.5e-45 186.4 143 65.7
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.6e-44 183.7 119 71.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.3e-41 174.1 193 50.3
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 2.7e-36 156.4 198 45.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.7e-36 155.6 186 44.6
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.0e-35 154.5 280 37.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.8e-34 147.9 188 48.9
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.3e-33 147.5 177 49.2
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.7e-33 147.1 139 56.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 7.7e-31 138.3 80 83.8
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 4.1e-24 115.9 74 77.0
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.3e-22 110.2 65 80.0
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.9e-22 109.8 104 58.7
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.9e-21 107.1 150 46.0
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.3e-21 106.3 113 53.1
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 3.3e-21 106.3 166 42.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-20 102.8 81 64.2
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-19 101.3 74 70.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.4e-19 100.9 59 81.4
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.0e-19 99.8 66 74.2
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-17 94.4 196 35.2
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 2.9e-17 93.2 107 51.4
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.2e-16 89.7 96 53.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 4.1e-16 89.4 170 37.6
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 6.6e-14 82.0 158 36.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.1e-12 77.0 55 67.3
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.8e-11 73.9 75 56.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 5.8e-10 68.9 179 30.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 6.4e-09 65.5 52 67.3
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.9e-08 63.9 75 46.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 7.0e-08 62.0 46 63.0


User provided reference genes

Program Settings