Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.2e-114 415.6 209 100.0
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.0e-111 406.8 209 96.7
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.0e-111 406.8 209 96.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.4e-111 406.4 209 96.7
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.4e-111 406.4 209 97.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.9e-111 404.8 209 96.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 6.7e-111 404.1 209 96.2
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.5e-110 402.9 208 95.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.3e-110 401.7 209 94.7
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 7.4e-110 400.6 209 94.3
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 94.3
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 4.8e-109 397.9 209 94.7
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 2.4e-108 395.6 209 94.3
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.5e-107 392.9 207 93.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.0e-107 392.5 209 93.8
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.6e-107 392.1 209 93.3
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.5e-105 385.6 209 90.9
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.2e-98 362.5 205 86.3
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 6.3e-93 344.4 208 80.8
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.8e-92 342.8 208 79.3
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.4e-92 342.4 209 78.9
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 9.1e-92 340.5 206 79.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.7e-91 339.0 208 78.4
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.7e-91 339.0 205 80.5
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.5e-91 338.6 205 80.0
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 4.5e-91 338.2 206 79.6
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 5.9e-91 337.8 205 80.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 5.9e-91 337.8 205 80.5
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 7.7e-91 337.4 207 77.3
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 7.7e-91 337.4 205 79.0
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 7.7e-91 337.4 207 77.3
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.3e-90 336.7 206 79.6
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 77.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 2.9e-90 335.5 208 77.9
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 3.8e-90 335.1 209 77.0
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.8e-90 335.1 206 77.2
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 5.0e-90 334.7 208 77.9
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 6.5e-90 334.3 206 78.2
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 6.5e-90 334.3 208 77.4
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 8.5e-90 334.0 208 76.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.1e-89 333.6 208 76.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.5e-89 333.2 206 76.2
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.9e-89 332.8 208 76.9
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.9e-89 332.8 206 78.6
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 2.5e-89 332.4 209 76.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 76.9
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 75.5
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.2e-89 332.0 205 78.5
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.2e-89 332.0 208 76.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.2e-89 332.0 208 76.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 3.2e-89 332.0 205 78.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 4.2e-89 331.6 205 77.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 9.4e-89 330.5 207 76.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.2e-88 330.1 208 76.9
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.2e-88 330.1 205 77.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.2e-88 330.1 208 75.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 76.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 76.9
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.6e-88 329.7 207 75.8
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.6e-88 329.7 205 75.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 2.1e-88 329.3 207 76.8
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.7e-88 328.9 205 76.1
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.7e-88 328.9 209 81.3
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.7e-88 328.9 207 76.8
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.6e-88 328.6 207 75.8
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 4.7e-88 328.2 208 75.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.7e-88 328.2 206 77.2
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 8.0e-88 327.4 212 77.4
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.8e-87 326.2 206 76.7
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.3e-87 325.9 208 74.5
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.0e-87 325.5 206 76.2
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.0e-87 325.5 206 76.2
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 3.0e-87 325.5 205 75.1
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 8.8e-87 323.9 208 74.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.5e-86 323.2 213 72.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.4e-86 321.6 205 76.6
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 7.5e-86 320.9 207 74.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.7e-85 319.7 205 75.1
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.2e-85 319.3 205 73.7
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 3.7e-85 318.5 206 75.2
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 6.3e-85 317.8 205 74.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.4e-84 316.6 215 71.6
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.8e-84 316.2 227 69.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.8e-84 316.2 205 76.1
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.4e-84 314.7 205 74.1
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.3e-82 310.1 210 72.4
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.5e-81 305.8 209 72.2
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.3e-81 305.4 186 76.3
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 5.5e-81 304.7 203 71.9
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 7.2e-81 304.3 208 71.2
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.6e-78 295.8 203 70.9
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 3.4e-78 295.4 178 80.3
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.3e-77 293.5 205 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.1e-76 290.4 203 69.5
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.0e-75 286.2 208 69.7
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 2.7e-75 285.8 207 68.1
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.5e-75 285.4 213 63.8
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.5e-75 285.0 203 69.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.9e-74 282.3 208 68.3
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.9e-74 282.3 203 68.5
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.7e-69 265.4 170 74.1
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.6e-67 260.0 166 73.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.0e-66 257.3 170 71.8
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.5e-65 253.4 189 66.7
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 4.7e-64 248.4 157 75.8
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 3.1e-63 245.7 157 76.4
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 2.6e-62 242.7 157 75.8
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.3e-61 240.4 251 51.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 6.2e-56 221.5 212 54.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 6.2e-56 221.5 191 58.6
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 6.8e-55 218.0 135 76.3
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.6e-49 198.4 208 49.5
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.6e-48 196.8 182 56.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.6e-48 195.7 152 65.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 3.8e-45 185.7 123 74.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 3.8e-45 185.7 123 74.0
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 3.9e-42 175.6 210 47.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 5.6e-41 171.8 142 64.1
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-37 159.5 223 40.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-37 159.5 223 40.8
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 2.3e-34 149.8 95 75.8
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 9.3e-28 127.9 196 37.8
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-26 124.0 89 71.9
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.7e-19 99.8 65 69.2
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 5.1e-18 95.5 96 52.1
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 9.6e-17 91.3 53 83.0
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.4e-15 87.4 77 59.7
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.8e-15 87.0 52 75.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.8e-15 87.0 51 76.5
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-13 80.1 65 63.1
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.3e-10 70.9 54 64.8
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 8.7e-10 68.2 38 81.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 8.7e-10 68.2 57 57.9
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 7.4e-09 65.1 39 82.1
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 8.2e-08 61.6 134 36.6
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.8e-07 60.5 39 82.1
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 7.7e-06 55.1 34 76.5
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 7.7e-06 55.1 36 61.1


User provided reference genes

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