Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.6e-53 212.6 116 100.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.8e-28 129.4 85 75.3
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 8.8e-28 127.1 85 74.1
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 8.8e-28 127.1 85 74.1
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 8.8e-28 127.1 85 74.1
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 8.8e-28 127.1 85 74.1
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 8.8e-28 127.1 85 74.1
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.5e-27 126.3 85 72.9
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.5e-27 126.3 85 72.9
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.5e-27 126.3 85 72.9
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.5e-27 126.3 85 72.9
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 3.3e-27 125.2 85 71.8
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 5.7e-27 124.4 85 71.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 7.4e-27 124.0 85 71.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 4.8e-26 121.3 85 69.4
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 6.3e-26 120.9 85 70.6
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 4.1e-25 118.2 85 68.2
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 5.3e-25 117.9 85 67.1
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 7.0e-25 117.5 85 67.1
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.5e-24 114.8 85 64.7
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.5e-24 114.8 85 64.7
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.9e-24 114.4 85 63.5
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.5e-23 110.9 85 61.2
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-22 109.8 75 66.7
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 5.5e-22 107.8 85 62.4
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 7.2e-22 107.5 85 64.7
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.2e-21 106.7 85 61.2
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 3.6e-21 105.1 85 63.5
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 6.1e-21 104.4 85 58.8
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 8.0e-21 104.0 85 60.0
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.3e-20 102.4 85 56.5
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.3e-20 102.4 85 57.6
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 3.0e-20 102.1 85 55.3
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.0e-20 102.1 85 56.5
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.0e-20 102.1 85 57.6
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.0e-20 101.7 85 56.5
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 5.2e-20 101.3 85 58.8
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 6.8e-20 100.9 85 56.5
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 8.8e-20 100.5 83 59.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 8.8e-20 100.5 85 55.3
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.2e-19 100.1 85 56.5
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.2e-19 100.1 85 54.1
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.5e-19 99.8 85 55.3
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.5e-19 99.8 85 56.5
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.5e-19 99.8 85 55.3
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 2.6e-19 99.0 80 58.8
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.6e-19 99.0 80 57.5
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.6e-19 99.0 83 57.8
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 2.6e-19 99.0 85 56.5
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.4e-19 98.6 85 55.3
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.4e-19 98.6 85 56.5
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 3.4e-19 98.6 86 54.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 4.4e-19 98.2 80 56.2
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 4.4e-19 98.2 80 56.2
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 4.4e-19 98.2 83 57.8
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 4.4e-19 98.2 75 69.3
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 4.4e-19 98.2 75 69.3
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 4.4e-19 98.2 85 51.8
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 4.4e-19 98.2 74 59.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 4.4e-19 98.2 74 59.5
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 5.7e-19 97.8 80 56.2
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 7.5e-19 97.4 85 56.5
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.7e-19 97.1 85 55.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.7e-19 97.1 74 60.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.3e-18 96.7 83 56.6
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.3e-18 96.7 83 54.2
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.3e-18 96.7 83 56.6
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.7e-18 96.3 80 53.8
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.7e-18 96.3 85 54.1
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.7e-18 96.3 80 55.0
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.7e-18 96.3 84 53.6
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.7e-18 96.3 84 53.6
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.7e-18 96.3 80 56.2
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.7e-18 96.3 80 56.2
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 2.8e-18 95.5 74 54.1
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.8e-18 95.5 84 52.4
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.8e-18 95.5 84 53.6
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.8e-18 94.7 80 53.8
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.8e-18 94.7 85 50.6
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.8e-18 94.7 85 50.6
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 6.3e-18 94.4 83 54.2
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 6.3e-18 94.4 74 52.7
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 6.3e-18 94.4 85 52.9
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 6.3e-18 94.4 80 53.8
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.3e-18 94.4 80 55.0
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 8.3e-18 94.0 85 49.4
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 8.3e-18 94.0 85 51.8
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.4e-17 93.2 84 57.1
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.4e-17 93.2 85 51.8
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.4e-17 93.2 85 51.8
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.4e-17 93.2 85 51.8
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 1.8e-17 92.8 85 50.6
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.8e-17 92.8 85 49.4
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.8e-17 92.8 85 50.6
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.4e-17 92.4 80 53.8
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 4.1e-17 91.7 85 50.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 5.3e-17 91.3 85 51.8
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 5.3e-17 91.3 78 53.8
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 9.1e-17 90.5 85 50.6
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 9.1e-17 90.5 78 53.8
C01p09080 Brassica napus HOM05D040186 ORTHO05D033310 1.2e-16 90.1 122 57.4
BolC1t00899H Brassica oleracea HOM05D040186 ORTHO05D033310 1.2e-16 90.1 122 57.4
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.2e-16 90.1 82 50.0
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.6e-16 89.7 80 46.2
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 7.7e-16 87.4 74 52.7
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.0e-15 87.0 90 50.0
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.0e-15 87.0 90 50.0
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.3e-15 86.7 85 48.2
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.2e-15 85.9 86 48.8
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 3.8e-15 85.1 80 50.0
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 8.5e-15 84.0 85 47.1
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 8.5e-15 84.0 74 51.4
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.9e-14 82.8 78 48.7
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.2e-14 82.0 91 42.9
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 4.2e-14 81.6 78 50.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.5e-14 81.3 78 48.7
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.5e-14 81.3 78 48.7
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.5e-14 81.3 78 48.7
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 5.5e-14 81.3 72 51.4
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.5e-14 81.3 80 45.0
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 7.2e-14 80.9 78 50.0
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 9.4e-14 80.5 78 48.7
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 3.6e-13 78.6 78 46.2
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 4.7e-13 78.2 85 45.9
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.1e-13 77.8 56 64.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 4.4e-11 71.6 74 44.6
BraA01t00758Z Brassica rapa HOM05D040186 ORTHO05D033310 1.3e-10 70.1 40 87.5
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.8e-10 68.9 64 48.4
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-09 67.0 56 57.1
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 3.1e-09 65.5 59 45.8
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 9.1e-09 63.9 60 48.3
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.0e-08 62.8 53 50.9
BcaNung06652 Brassica carinata HOM05D004945 ORTHO05D005536 2.9e-07 58.9 95 44.2
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 8.6e-07 57.4 86 32.6


User provided reference genes

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