Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 3661.3 1883 100.0
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 0.0e+00 3526.9 1884 96.3
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 3366.2 1893 92.1
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 3366.2 1893 92.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 0.0e+00 3363.2 1896 92.5
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 3221.4 1933 87.2
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 0.0e+00 2900.9 1968 78.0
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 0.0e+00 2646.3 1959 73.1
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 0.0e+00 2578.9 1981 70.9
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 0.0e+00 2547.3 2021 68.7
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 0.0e+00 2509.6 1968 70.7
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 0.0e+00 2467.6 1980 68.0
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 0.0e+00 2204.5 1932 63.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 1949.9 1990 55.8
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1409.0 2079 42.5
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1382.9 2035 42.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1377.8 2137 41.0
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1366.7 2081 41.2
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1337.4 2082 41.2
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1334.3 2153 39.2
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1329.7 2011 40.8
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1325.5 2011 40.8
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1315.1 2010 40.8
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1314.3 2143 39.5
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1302.0 2097 40.2
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1293.9 2136 40.1
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1267.7 2103 38.6
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1258.8 2095 39.1
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1245.0 2067 38.8
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1244.2 1993 39.6
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1237.6 2117 38.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1235.7 2130 38.4
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1230.7 2104 38.1
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1213.0 2050 37.9
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1187.9 2128 37.0
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1187.6 2033 37.9
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1187.2 2037 37.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1178.3 2137 37.0
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1173.3 2095 37.4
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1165.2 2111 36.3
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1158.3 1999 38.0
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1143.3 2057 36.7
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1127.1 2081 36.2
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1113.2 2070 36.6
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1109.0 1993 36.7
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1105.5 1973 36.6
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1100.1 1981 37.2
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1080.9 1953 36.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1076.6 2086 35.5
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1075.1 2078 34.5
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 1.3e-311 1073.5 2094 35.2
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 5.2e-311 1072.0 1959 35.9
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 9.8e-310 1067.8 2088 34.5
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 8.2e-309 1064.7 2057 36.3
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 8.5e-306 1054.7 2097 34.0
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 4.2e-305 1052.4 2074 34.6
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 6.8e-303 1045.0 2086 35.0
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 1.5e-302 1043.9 2010 35.4
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 5.7e-302 1042.0 1973 35.3
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 4.8e-301 1038.9 2033 35.6
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 6.3e-301 1038.5 2084 35.0
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 1.3e-298 1030.8 2062 35.0
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 2.9e-298 1029.6 2090 34.8
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 6.5e-298 1028.5 2034 35.7
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 5.5e-297 1025.4 2026 34.9
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.8e-295 1020.4 1950 36.5
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 2.0e-294 1016.9 2035 35.2
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 2.0e-291 1006.9 2042 33.6
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 2.0e-291 1006.9 2110 34.7
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 2.5e-289 1000.0 2047 34.4
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 6.8e-279 965.3 1735 37.5
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 1.2e-278 964.5 1957 33.6
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 3.4e-278 963.0 1991 34.0
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.4e-276 956.8 2077 34.1
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 9.9e-270 934.9 2030 33.6
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 5.4e-268 929.1 2021 33.6
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 9.5e-265 918.3 2031 33.3
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 5.8e-262 909.1 2034 33.5
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 2.2e-261 907.1 1687 35.5
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 7.8e-259 898.7 2013 32.3
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.1e-257 894.8 2054 32.9
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 3.1e-255 886.7 1998 33.6
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 3.9e-250 869.8 1515 37.8
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 6.6e-250 869.0 2147 31.5
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 4.8e-248 862.8 1932 33.1
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.5e-241 840.5 1999 32.4
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 3.5e-235 820.1 1960 31.3
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 5.1e-218 763.1 1456 35.6
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.4e-215 755.0 1629 33.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 9.1e-199 699.1 1995 29.0
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 8.5e-197 692.6 1613 31.8
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 2.4e-175 621.3 1434 31.8
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 3.7e-168 597.4 1281 31.9
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-164 585.9 1951 27.4
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 1.1e-143 516.2 1108 32.9
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.3e-128 466.1 698 41.3
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 9.3e-127 459.9 770 39.1
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 6.7e-125 453.8 522 48.3
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 8.7e-125 453.4 999 32.0
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 5.5e-103 380.9 1300 26.0
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 9.4e-103 380.2 2257 23.9
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 1.2e-102 379.8 765 35.2
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 2.3e-101 375.6 2209 22.9
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 5.7e-100 370.9 2091 22.6
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.7e-73 282.3 582 34.0
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 3.1e-66 258.8 1826 22.3
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 3.2e-58 232.3 659 30.8
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 3.0e-56 225.7 561 31.9
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 1.5e-52 213.4 118 84.7
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 4.9e-51 208.4 171 58.5
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 8.3e-51 207.6 114 86.0
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.7e-49 202.6 719 28.0
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.0e-48 200.7 344 37.2
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 1.9e-47 196.4 104 87.5
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 5.8e-44 184.9 267 39.0
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 3.7e-43 182.2 100 86.0
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 3.7e-43 182.2 93 90.3
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 3.7e-43 182.2 236 44.1
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 1.1e-42 180.6 93 90.3
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 2.4e-42 179.5 88 92.0
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.3e-40 173.7 392 32.4
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 5.1e-40 171.8 402 29.9
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 8.6e-40 171.0 480 30.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 6.8e-37 161.4 217 41.5
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 2.2e-27 129.8 122 59.0
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 2.2e-27 129.8 385 29.4
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-26 127.5 290 34.1
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 1.2e-25 124.0 136 52.9
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 3.9e-24 119.0 55 96.4
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 5.6e-23 115.2 108 50.0
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 1.1e-21 110.9 86 58.1
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 5.3e-21 108.6 249 27.3
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 3.4e-20 105.9 178 31.5
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 7.6e-20 104.8 51 92.2
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 1.9e-18 100.1 144 38.9
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.9e-18 100.1 124 41.1
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 3.2e-18 99.4 239 32.2
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 3.6e-14 85.9 112 41.1
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 4.0e-13 82.4 109 45.0
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-12 79.0 127 35.4
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 7.6e-12 78.2 285 27.7
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 1.1e-10 74.3 79 45.6
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.9e-10 73.6 76 50.0
Psat2g036680 Pisum sativum HOM05D004890 ORTHO05D005869 7.1e-10 71.6 95 45.3
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-08 67.8 88 40.9
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 1.8e-08 67.0 262 26.7
C04p46920 Brassica napus HOM05D017930 ORTHO05D033499 3.3e-07 62.8 33 81.8
BolC4t26285H Brassica oleracea HOM05D017930 ORTHO05D033499 3.3e-07 62.8 33 81.8
BraA03t15490Z Brassica rapa HOM05D017930 ORTHO05D033499 5.6e-07 62.0 31 87.1


User provided reference genes

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