Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p07960 Brassica napus HOM05D007765 ORTHO05D009826 1.3e-74 283.1 163 100.0
BraA01t00741Z Brassica rapa HOM05D007765 ORTHO05D009826 2.3e-74 282.3 163 99.4
BcaC09g51800 Brassica carinata HOM05D007765 ORTHO05D009826 5.3e-71 271.2 163 96.3
C01p08880 Brassica napus HOM05D007765 ORTHO05D009826 5.3e-71 271.2 163 96.3
BolC1t00878H Brassica oleracea HOM05D007765 ORTHO05D009826 5.3e-71 271.2 163 96.3
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 1.1e-68 263.5 164 87.2
Sp7g28050 Schrenkiella parvula HOM05D007765 ORTHO05D009826 3.7e-64 248.4 163 88.3
CARHR238080 Cardamine hirsuta HOM05D007765 ORTHO05D009826 8.5e-61 237.3 163 79.8
Thhalv10026906m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 7.2e-60 234.2 163 79.8
BcaB03g12635 Brassica carinata HOM05D007765 ORTHO05D009826 9.4e-60 233.8 163 79.8
A08p19380 Brassica napus HOM05D007765 ORTHO05D009826 2.0e-57 226.1 163 84.7
BraA08t33899Z Brassica rapa HOM05D007765 ORTHO05D009826 2.0e-57 226.1 163 84.7
AT4G30180 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 4.4e-57 224.9 163 84.0
Carub.0007s1043 Capsella rubella HOM05D007765 ORTHO05D009826 9.7e-57 223.8 164 78.0
C03p88840 Brassica napus HOM05D007765 ORTHO05D009826 6.3e-56 221.1 163 82.8
BolC3t21196H Brassica oleracea HOM05D007765 ORTHO05D009826 6.3e-56 221.1 163 82.8
AL7G22010 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 2.6e-54 215.7 161 78.3
AL3G52940 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 1.0e-42 177.2 172 59.3
AT2G18969 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 1.0e-42 177.2 175 58.3
Sp3g32420 Schrenkiella parvula HOM05D007765 ORTHO05D009826 1.4e-42 176.8 168 61.3
Carub.0003s3320 Capsella rubella HOM05D007765 ORTHO05D009826 7.5e-41 171.0 176 58.5
BcaC04g22872 Brassica carinata HOM05D007765 ORTHO05D009826 8.3e-40 167.5 164 59.1
BolC9t54340H Brassica oleracea HOM05D007765 ORTHO05D009826 1.1e-39 167.2 164 59.1
A09p12150 Brassica napus HOM05D007765 ORTHO05D009826 3.1e-39 165.6 164 58.5
C09p14370 Brassica napus HOM05D007765 ORTHO05D009826 3.1e-39 165.6 164 58.5
BraA09t36859Z Brassica rapa HOM05D007765 ORTHO05D009826 3.1e-39 165.6 164 58.5
CARHR109510 Cardamine hirsuta HOM05D007765 ORTHO05D009826 1.2e-38 163.7 174 56.3
Thhalv10022885m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 5.9e-38 161.4 168 56.5
BcaB07g31628 Brassica carinata HOM05D007765 ORTHO05D009826 8.5e-37 157.5 164 57.3
THA.LOC104819971 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 8.0e-35 151.0 170 54.7
THA.LOC104803946 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 6.8e-34 147.9 175 54.3
BcaC04g20459 Brassica carinata HOM05D007765 ORTHO05D009826 2.8e-27 125.9 82 80.5
THA.LOC104803486 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 3.6e-27 125.6 173 48.0
TPR.G5381 Trifolium pratense HOM05D007765 ORTHO05D009826 3.3e-20 102.4 164 40.9
BcaB03g16695 Brassica carinata HOM05D007765 ORTHO05D009826 2.1e-19 99.8 104 53.8
Aa31LG8G16060 Aethionema arabicum HOM05D007765 ORTHO05D009826 3.6e-19 99.0 161 47.8
arahy.Tifrunner.gnm1.ann1.8SXC5S Arachis hypogaea HOM05D007765 ORTHO05D009826 3.6e-19 99.0 153 41.2
Medtr4g127700 Medicago truncatula HOM05D007765 ORTHO05D009826 1.0e-18 97.4 150 42.7
BcaC06g36508 Brassica carinata HOM05D007765 ORTHO05D009826 3.1e-18 95.9 101 55.4
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 3.1e-18 95.9 158 39.2
Medtr2g036670 Medicago truncatula HOM05D007765 ORTHO05D009826 3.4e-17 92.4 175 35.4
Gohir.D13G216400 Gossypium hirsutum HOM05D007765 ORTHO05D009826 2.2e-16 89.7 158 37.3
Dinv41219 Davidia involucrata HOM05D007765 ORTHO05D009826 2.9e-16 89.4 195 34.9
Gorai.013G246700 Gossypium raimondii HOM05D007765 ORTHO05D009826 6.4e-16 88.2 158 37.3
TPR.G9240 Trifolium pratense HOM05D007765 ORTHO05D009826 1.4e-15 87.0 171 35.1
Gohir.A13G212300 Gossypium hirsutum HOM05D007765 ORTHO05D009826 2.4e-15 86.3 158 37.3
Lj6g0023329 Lotus japonicus HOM05D007765 ORTHO05D009826 2.4e-15 86.3 172 36.0
arahy.Tifrunner.gnm1.ann1.YM1G3Q Arachis hypogaea HOM05D007765 ORTHO05D009826 4.1e-15 85.5 175 41.7
Lalb_Chr12g0199471 Lupinus albus HOM05D007765 ORTHO05D009826 4.1e-15 85.5 175 36.6
Lalb_Chr18g0052451 Lupinus albus HOM05D007765 ORTHO05D009826 7.0e-15 84.7 173 37.6
Lj4g0004123 Lotus japonicus HOM05D007765 ORTHO05D009826 1.2e-14 84.0 203 30.5
Phvul.009G238800 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 1.6e-14 83.6 187 31.6
Phvul.003G143700 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 3.5e-14 82.4 209 32.5
CiPaw.07G194200 Carya illinoinensis HOM05D007765 ORTHO05D009826 4.6e-14 82.0 227 33.9
Sed0013776 Sechium edule HOM05D007765 ORTHO05D009826 7.8e-14 81.3 168 33.3
COL.COLO4_36375 Corchorus olitorius HOM05D007765 ORTHO05D009826 1.3e-13 80.5 194 33.0
QL11p005142 Quercus lobata HOM05D007765 ORTHO05D009826 5.0e-13 78.6 207 31.9
FAN12G2617 Fragaria x ananassa HOM05D007765 ORTHO05D009826 6.6e-13 78.2 205 31.2
Glyma.15G162800 Glycine max HOM05D007765 ORTHO05D009826 6.6e-13 78.2 187 33.2
Glyma.09G056600 Glycine max HOM05D007765 ORTHO05D009826 8.6e-13 77.8 200 31.5
VMungo1309G2639 Vigna mungo HOM05D007765 ORTHO05D009826 8.6e-13 77.8 189 34.4
FvH4_4g07800 Fragaria vesca HOM05D007765 ORTHO05D009826 1.1e-12 77.4 208 31.7
ClCG11G011990 Citrullus lanatus HOM05D007765 ORTHO05D009826 1.9e-12 76.6 196 31.1
CsaV3_2G008530 Cucumis sativus L. HOM05D007765 ORTHO05D009826 2.5e-12 76.3 185 30.3
FAN22G0698 Fragaria x ananassa HOM05D007765 ORTHO05D009826 2.5e-12 76.3 207 31.4
RcHm_v2.0_Chr4g0400891 Rosa chinensis HOM05D007765 ORTHO05D009826 2.5e-12 76.3 202 31.7
Lalb_Chr20g0116301 Lupinus albus HOM05D007765 ORTHO05D009826 4.3e-12 75.5 208 31.2
FAN07G1496 Fragaria x ananassa HOM05D007765 ORTHO05D009826 5.6e-12 75.1 207 30.9
Glyma.17G061700 Glycine max HOM05D007765 ORTHO05D009826 5.6e-12 75.1 205 33.2
TAR383G0713 Trochodendron aralioides HOM05D007765 ORTHO05D009826 5.6e-12 75.1 215 31.2
FAN17G2229 Fragaria x ananassa HOM05D007765 ORTHO05D009826 1.2e-11 73.9 208 31.2
Potri.018G090200 Populus trichocarpa HOM05D007765 ORTHO05D009826 2.8e-11 72.8 212 30.7
Atru.chr7.847 Acer truncatum HOM05D007765 ORTHO05D009826 8.0e-11 71.2 201 29.4
Glyma.13G098000 Glycine max HOM05D007765 ORTHO05D009826 8.0e-11 71.2 201 30.8
Duzib150G0923 Durio zibethinus HOM05D007765 ORTHO05D009826 1.4e-10 70.5 220 31.8
Psat1g146600 Pisum sativum HOM05D007765 ORTHO05D009826 1.2e-09 67.4 75 49.3
Prupe.1G081900 Prunus persica HOM05D007765 ORTHO05D009826 1.5e-09 67.0 199 33.2
Sabra18G0077700 Salix brachista HOM05D007765 ORTHO05D009826 2.0e-09 66.6 214 27.6
MBI16_g38085_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 9.8e-09 64.3 192 28.1
Dinv19560 Davidia involucrata HOM05D007765 ORTHO05D009826 3.7e-08 62.4 195 29.2
VMungo1215G1692 Vigna mungo HOM05D007765 ORTHO05D009826 4.1e-07 58.9 151 29.8
PSO170G3972 Papaver somniferum HOM05D007765 ORTHO05D009826 9.2e-07 57.8 229 27.5
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 6.0e-06 55.1 148 27.0


User provided reference genes

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