Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 1.5e-133 479.6 253 100.0
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 1.5e-133 479.6 253 100.0
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 1.2e-117 426.8 254 87.4
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 1.4e-115 419.9 257 85.2
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 1.4e-115 419.9 257 85.2
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 1.4e-115 419.9 257 85.2
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 3.1e-94 349.0 266 70.7
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 1.9e-88 329.7 263 68.1
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 1.5e-85 320.1 264 66.3
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 5.7e-80 301.6 267 64.0
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 5.7e-80 301.6 267 64.0
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 5.7e-80 301.6 267 64.0
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 1.1e-78 297.4 267 63.7
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 1.4e-78 297.0 267 63.7
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 1.3e-76 290.4 265 62.3
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 3.6e-74 282.3 259 62.9
BcaNung00532 Brassica carinata HOM05D003020 ORTHO05D003226 4.5e-61 238.8 205 63.9
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 1.5e-56 223.8 278 49.3
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 1.3e-52 210.7 293 47.4
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 3.8e-44 182.6 253 48.2
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.8e-33 147.1 262 43.5
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 1.4e-30 137.5 247 39.7
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 1.9e-30 137.1 262 41.2
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.2e-29 134.4 264 36.7
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 1.6e-29 134.0 246 45.1
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 4.6e-29 132.5 240 40.8
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 1.7e-28 130.6 265 37.7
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 3.9e-28 129.4 255 40.4
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 8.6e-28 128.3 248 39.9
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.5e-27 126.7 249 39.8
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 4.3e-27 125.9 244 41.0
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 5.6e-27 125.6 252 37.7
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 4.7e-26 122.5 248 37.9
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.2e-26 122.1 237 38.4
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 8.1e-26 121.7 250 37.2
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.4e-25 120.9 246 38.2
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 1.8e-25 120.6 256 40.6
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.8e-25 120.6 246 37.8
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 3.1e-25 119.8 236 36.9
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 3.1e-25 119.8 274 39.4
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 6.8e-25 118.6 272 36.0
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-24 117.9 220 37.7
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-24 117.9 273 35.5
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 1.5e-24 117.5 236 35.6
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.0e-24 117.1 245 37.6
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 1.3e-23 114.4 234 37.2
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 2.9e-23 113.2 238 37.0
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 2.9e-23 113.2 231 37.7
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.9e-23 113.2 241 35.7
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 3.7e-23 112.8 244 36.5
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 6.4e-23 112.1 233 37.8
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 8.3e-23 111.7 228 38.6
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 2.4e-22 110.2 252 34.9
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 3.2e-22 109.8 243 35.0
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 5.4e-22 109.0 241 36.5
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 5.4e-22 109.0 240 34.6
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 7.1e-22 108.6 259 34.4
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 7.1e-22 108.6 262 35.1
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 7.1e-22 108.6 276 36.2
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 9.2e-22 108.2 245 36.3
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 1.2e-21 107.8 208 38.9
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.6e-21 107.5 253 36.0
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 1.6e-21 107.5 237 34.6
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 3.5e-21 106.3 253 36.0
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 4.6e-21 105.9 226 34.1
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 6.0e-21 105.5 247 34.0
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 6.0e-21 105.5 247 34.0
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 6.0e-21 105.5 270 33.3
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 1.7e-20 104.0 239 36.4
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 3.0e-20 103.2 273 34.8
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 3.0e-20 103.2 243 34.2
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.9e-20 102.8 247 34.8
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 1.1e-19 101.3 255 34.1
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 1.5e-19 100.9 193 38.3
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.5e-19 100.1 242 35.5
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 2.5e-19 100.1 235 34.0
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 5.6e-19 99.0 201 36.8
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 5.6e-19 99.0 231 38.1
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.6e-18 96.3 252 34.5
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.7e-18 95.9 252 34.1
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.1e-18 95.1 252 34.1
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 1.1e-17 94.7 248 33.9
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.4e-17 94.4 235 34.0
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.8e-17 94.0 152 41.4
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 2.4e-17 93.6 260 34.6
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 4.0e-17 92.8 275 31.6
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 5.2e-17 92.4 200 34.0
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 8.9e-17 91.7 243 35.0
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.2e-16 91.3 241 34.9
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 1.5e-16 90.9 239 34.3
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 2.6e-16 90.1 239 35.1
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 2.6e-16 90.1 195 37.4
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.4e-16 89.4 260 33.1
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 7.6e-16 88.6 242 31.4
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 9.9e-16 88.2 226 36.7
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.2e-15 87.0 267 31.1
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 2.2e-15 87.0 263 30.8
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 8.4e-15 85.1 230 31.7
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.1e-14 84.7 242 34.3
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 9.2e-14 81.6 275 30.2
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.2e-14 81.6 263 33.1
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 2.7e-13 80.1 241 32.0
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.0e-12 76.6 221 30.3
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 6.6e-12 75.5 244 30.3
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 1.1e-11 74.7 225 28.4
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.9e-11 73.9 222 31.1
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 2.5e-11 73.6 246 29.3
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.3e-11 73.2 225 30.2
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 7.3e-11 72.0 240 30.8
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 9.6e-11 71.6 232 32.8
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 9.6e-11 71.6 232 32.8
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 9.6e-11 71.6 244 27.9
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 2.8e-10 70.1 214 29.4
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 8.1e-10 68.6 198 35.4
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 2.4e-09 67.0 214 29.0
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 4.4e-08 62.8 249 30.5
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.8e-08 62.4 200 30.5
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.8e-08 62.4 275 28.7
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 7.6e-08 62.0 263 29.3
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 9.9e-08 61.6 264 28.8
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.3e-07 61.2 264 28.8
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 1.7e-07 60.8 182 30.8
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 3.8e-07 59.7 270 27.4
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 4.9e-07 59.3 220 31.4
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 8.4e-07 58.5 221 27.1
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 1.1e-06 58.2 234 26.1
Actinidia02960 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.4e-06 57.0 205 27.8
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 3.2e-06 56.6 225 29.8
ATR0580G303 Amborella trichopoda HOM05D003020 ORTHO05D003226 4.2e-06 56.2 217 29.0
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 4.2e-06 56.2 267 27.3
Hma1.2p1_2080F.1_g313480 Hydrangea macrophylla HOM05D011460 ORTHO05D010383 9.3e-06 55.1 195 29.2


User provided reference genes

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