Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-274 949.1 504 100.0
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 4.8e-267 924.1 533 94.2
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 3.3e-247 858.2 504 92.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 3.3e-247 858.2 504 92.1
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 7.2e-247 857.1 531 88.3
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 5.4e-210 734.6 525 81.5
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 6.7e-192 674.5 561 71.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.8e-184 649.8 560 70.9
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.7e-182 642.1 546 71.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.7e-182 642.1 546 71.8
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.3e-179 633.6 555 69.4
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.7e-179 633.3 551 70.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.1e-178 630.6 546 71.4
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 9.3e-178 627.5 566 68.7
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.9e-170 603.2 551 68.6
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 7.2e-170 601.3 558 66.7
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.5e-167 592.8 566 67.1
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.5e-151 540.4 511 68.1
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 5.7e-135 485.3 468 65.2
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.6e-103 380.2 633 45.8
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 4.6e-100 369.4 616 46.8
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.5e-55 221.5 318 47.5
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 3.8e-54 216.9 387 39.8
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 6.5e-54 216.1 397 42.1
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.2e-53 213.4 576 34.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.2e-52 211.8 583 35.0
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 3.6e-52 210.3 310 44.8
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.0e-51 208.8 558 35.5
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.3e-51 207.6 370 42.2
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 3.9e-51 206.8 189 70.4
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.5e-50 204.1 313 44.7
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 5.7e-50 203.0 352 39.2
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 9.7e-50 202.2 318 43.7
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 6.3e-49 199.5 315 43.5
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 6.3e-49 199.5 311 46.0
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 3.1e-48 197.2 452 36.1
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.1e-48 197.2 321 43.6
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 5.3e-48 196.4 499 36.3
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.2e-47 195.3 323 44.9
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.5e-47 193.4 306 46.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 7.7e-47 192.6 404 38.1
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.3e-46 191.8 308 45.5
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.2e-46 191.0 424 39.6
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 2.9e-46 190.7 306 42.8
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.4e-45 188.3 337 40.7
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.9e-45 188.0 528 34.3
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 5.5e-45 186.4 533 33.8
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 7.2e-45 186.0 316 44.3
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.2e-44 185.3 562 34.0
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 2.7e-44 184.1 335 42.4
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 2.7e-44 184.1 397 37.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.0e-43 182.2 510 32.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.0e-43 182.2 548 35.6
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.4e-43 181.8 319 42.6
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.6e-42 177.6 302 41.1
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 7.4e-42 176.0 342 41.8
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 8.2e-41 172.6 359 37.6
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.1e-40 170.6 312 41.0
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 3.1e-40 170.6 395 34.9
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 5.3e-40 169.9 318 38.1
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 9.1e-40 169.1 528 32.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.0e-39 167.9 332 38.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 2.6e-39 167.5 319 40.1
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 5.9e-39 166.4 549 31.7
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 7.7e-39 166.0 286 42.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.9e-38 164.1 307 39.7
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.1e-37 162.2 552 32.2
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.1e-37 162.2 560 32.0
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.9e-37 161.4 346 38.2
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.5e-37 161.0 404 37.1
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 9.4e-37 159.1 288 37.8
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 9.4e-37 159.1 318 39.3
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.2e-36 158.7 317 39.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.2e-36 158.7 477 33.8
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 2.1e-36 157.9 292 41.4
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 2.7e-36 157.5 302 38.7
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 2.7e-36 157.5 369 35.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.8e-35 154.8 268 42.9
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 2.3e-35 154.5 495 31.7
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 8.8e-35 152.5 540 32.8
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.5e-34 151.8 315 37.8
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 9.7e-34 149.1 581 31.8
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.3e-33 148.7 294 38.4
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.7e-33 148.3 294 38.4
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 4.8e-33 146.7 298 37.2
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.2e-33 146.0 269 40.9
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.4e-32 145.2 310 37.4
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.4e-32 145.2 487 32.4
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.8e-32 144.8 391 33.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.5e-31 140.2 268 41.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.0e-30 139.0 300 39.0
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 8.5e-30 136.0 286 38.5
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 8.5e-30 136.0 272 38.6
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.9e-29 134.8 438 33.8
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 7.2e-29 132.9 472 31.4
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 1.8e-27 128.3 311 34.7
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 5.2e-27 126.7 210 42.9
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 6.8e-27 126.3 529 28.4
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.5e-26 125.2 217 41.0
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 4.4e-26 123.6 158 45.6
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 4.4e-26 123.6 364 33.2
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 2.2e-25 121.3 499 28.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.1e-24 119.0 363 32.0
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.1e-24 117.5 570 29.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 9.1e-24 115.9 364 32.1
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 1.6e-23 115.2 430 30.0
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.7e-23 114.4 551 29.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 6.5e-22 109.8 564 26.8
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.2e-21 107.5 423 29.3
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 5.5e-21 106.7 366 32.2
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.6e-20 105.1 206 36.9
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 8.0e-20 102.8 304 31.6
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 5.2e-19 100.1 304 31.6
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 8.8e-19 99.4 571 28.4
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.6e-18 97.8 141 44.0
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.8e-17 94.4 160 45.6
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 8.3e-17 92.8 246 32.5
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.6e-15 88.6 53 79.2
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.0e-15 88.2 444 25.9
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 4.2e-13 80.5 194 37.6
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 9.5e-13 79.3 189 35.4
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 6.1e-12 76.6 66 63.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.6e-10 71.2 47 70.2
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 3.4e-10 70.9 294 29.3
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 4.4e-10 70.5 257 31.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 5.7e-10 70.1 91 45.1
A02p30240 Brassica napus HOM05D003055 ORTHO05D027220 7.5e-10 69.7 47 70.2
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.5e-10 69.7 47 68.1
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.7e-09 68.6 246 30.9
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 2.9e-09 67.8 287 27.9
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 3.7e-09 67.4 161 36.0
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.4e-08 65.5 473 23.9
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 1.8e-08 65.1 242 26.4
BraA01t02912Z Brassica rapa HOM05D005642 ORTHO05D006672 2.4e-08 64.7 70 48.6
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 5.4e-08 63.5 101 38.6
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.0e-07 61.6 241 32.4
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 1.7e-06 58.5 512 23.0
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 1.7e-06 58.5 233 31.8
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 2.3e-06 58.2 222 28.8
FvH4_7g05440 Fragaria vesca HOM05D003044 ORTHO05D001869 6.6e-06 56.6 224 28.6
Lj1g0024911 Lotus japonicus HOM05D006756 ORTHO05D001869 6.6e-06 56.6 238 26.5
RcHm_v2.0_Chr2g0088181 Rosa chinensis HOM05D006756 ORTHO05D001869 6.6e-06 56.6 242 25.6
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 8.6e-06 56.2 242 31.0


User provided reference genes

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