Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 1.4e-103 379.8 213 100.0
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 1.4e-103 379.8 213 100.0
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 4.0e-103 378.3 213 99.1
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 4.0e-103 378.3 213 99.1
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 4.9e-101 371.3 216 95.8
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-100 370.2 216 95.4
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 2.4e-100 369.0 213 97.2
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 2.4e-100 369.0 216 96.8
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.4e-100 369.0 214 93.5
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.4e-100 369.0 216 96.3
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-99 366.3 217 95.9
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-98 362.5 216 95.4
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 2.3e-98 362.5 216 95.4
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 2.3e-98 362.5 216 95.4
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 5.6e-97 357.8 214 84.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 5.3e-95 351.3 214 92.1
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.3e-90 336.7 214 84.1
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 8.7e-90 334.0 213 85.0
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 5.3e-87 324.7 217 76.5
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 8.4e-85 317.4 216 73.6
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 2.0e-78 296.2 217 69.1
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 5.8e-78 294.7 169 82.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.9e-77 292.4 169 82.2
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.1e-76 290.4 169 79.9
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.2e-76 288.5 169 79.9
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 2.7e-75 285.8 169 78.1
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 4.6e-75 285.0 169 78.7
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.1e-75 284.6 170 80.0
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.1e-75 284.6 170 80.0
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 7.9e-75 284.3 169 78.1
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 7.9e-75 284.3 169 79.9
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.8e-74 283.1 170 78.8
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.3e-74 282.7 169 79.9
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.3e-74 282.7 169 77.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 3.0e-74 282.3 214 65.9
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 3.9e-74 282.0 169 78.1
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.9e-74 282.0 169 77.5
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.7e-74 281.2 169 76.9
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 8.7e-74 280.8 170 79.4
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.1e-73 280.4 169 78.1
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 1.1e-73 280.4 169 78.7
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.1e-73 280.4 169 78.1
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.5e-73 280.0 170 78.8
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 1.9e-73 279.6 169 77.5
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.5e-73 279.3 169 76.9
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 3.3e-73 278.9 170 78.2
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 4.3e-73 278.5 169 76.3
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 5.7e-73 278.1 214 65.9
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 5.7e-73 278.1 169 79.3
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 7.4e-73 277.7 169 76.3
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.3e-72 276.9 170 77.1
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.3e-72 276.9 169 75.1
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.8e-71 273.1 169 75.1
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.8e-71 273.1 170 77.6
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 2.4e-71 272.7 169 75.1
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 4.1e-71 271.9 169 77.5
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 5.3e-71 271.6 169 74.0
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 5.3e-71 271.6 169 74.0
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.3e-71 271.6 169 74.0
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 6.9e-71 271.2 169 73.4
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.2e-70 270.4 170 76.5
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.0e-70 269.6 169 73.4
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.0e-70 269.6 169 75.1
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 4.5e-70 268.5 169 72.8
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 5.9e-70 268.1 169 74.6
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.0e-69 267.3 169 74.0
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.3e-69 266.9 169 74.0
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.3e-69 266.9 217 62.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.7e-69 266.5 169 73.4
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 2.2e-69 266.2 170 74.7
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.9e-69 265.8 169 72.2
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 5.0e-69 265.0 170 74.1
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 6.5e-69 264.6 169 73.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 6.5e-69 264.6 169 74.0
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.9e-68 263.1 169 72.2
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.5e-68 262.7 169 72.8
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 3.2e-68 262.3 170 72.9
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.2e-68 261.9 166 72.3
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 5.5e-68 261.5 169 72.8
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 7.2e-68 261.2 170 72.9
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 9.4e-68 260.8 214 62.6
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.2e-67 260.4 214 59.8
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.7e-67 259.2 169 71.6
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 3.6e-67 258.8 170 74.1
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.0e-66 257.3 169 74.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.4e-66 256.9 170 72.9
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.4e-66 256.9 170 72.9
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.0e-66 255.8 214 61.2
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.0e-66 255.8 170 72.4
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 3.0e-66 255.8 170 72.4
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 3.9e-66 255.4 170 71.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 8.8e-66 254.2 170 71.8
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.1e-65 253.8 170 70.6
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.5e-65 253.4 170 71.2
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 2.0e-65 253.1 170 71.8
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.5e-65 252.7 161 72.7
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 5.7e-65 251.5 170 71.2
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.3e-64 250.4 170 68.8
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.7e-64 250.0 169 70.4
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 1.7e-64 250.0 170 71.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.7e-64 248.8 169 69.2
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 4.8e-64 248.4 170 71.2
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 3.1e-63 245.7 149 77.9
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.7e-61 240.0 189 60.8
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.1e-60 237.3 170 65.3
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 4.2e-60 235.3 188 62.2
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 5.5e-60 235.0 222 56.8
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 7.2e-60 234.6 188 61.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 9.4e-60 234.2 171 66.7
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 7.9e-59 231.1 171 65.5
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.5e-57 226.9 189 59.3
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 5.7e-57 224.9 286 45.8
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 3.7e-56 222.2 256 47.7
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 7.0e-55 218.0 169 60.4
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.6e-54 216.1 171 61.4
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 2.6e-54 216.1 171 61.4
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 7.7e-54 214.5 171 60.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 6.1e-51 204.9 134 72.4
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.0e-51 204.5 134 72.4
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 6.7e-50 201.4 169 58.0
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-47 194.1 140 64.3
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.0e-45 187.6 205 54.1
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.0e-45 187.6 112 75.9
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 8.5e-45 184.5 104 80.8
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 2.7e-43 179.5 91 94.5
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 6.1e-43 178.3 146 62.3
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.3e-42 176.4 104 76.0
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.2e-42 175.3 104 76.9
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 7.5e-41 171.4 105 73.3
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 2.8e-40 169.5 93 82.8
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 2.4e-39 166.4 103 71.8
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.6e-38 163.7 107 70.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 2.9e-37 159.5 123 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 3.8e-37 159.1 108 65.7
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 9.4e-36 154.5 113 61.1
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.0e-34 149.4 85 81.2
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-34 149.1 143 58.7
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-34 149.1 143 58.7
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 5.7e-33 145.2 113 57.5
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 5.0e-29 132.1 90 74.4
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 7.8e-22 108.2 72 69.4
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.2e-18 95.5 66 69.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.9e-16 89.0 76 55.3
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.1e-12 77.8 78 47.4
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 4.3e-12 75.9 59 62.7
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 4.7e-11 72.4 51 60.8
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 6.2e-11 72.0 54 57.4
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.8e-10 70.5 48 70.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 3.1e-10 69.7 46 60.9
BolC3t21104H Brassica oleracea HOM05D046859 ORTHO05D040831 5.8e-09 65.5 50 68.0


User provided reference genes

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