Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3654.8 1865 100.0
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 3587.3 1885 97.7
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3540.0 1877 95.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 3512.2 1856 96.0
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 3483.7 1886 94.1
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 3243.0 1859 88.2
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 3146.3 1859 85.5
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 3124.0 1862 84.8
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 3118.9 1862 84.7
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 3086.6 1828 86.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2718.0 1824 76.1
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2712.9 1844 75.4
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2593.9 1885 71.7
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2087.4 1947 57.9
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2084.7 1889 58.9
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2081.2 1937 58.4
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2071.6 1958 57.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2069.7 1917 58.0
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2067.4 1918 58.6
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2060.4 1959 57.2
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 1908 58.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2054.6 1933 57.3
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2051.6 1952 57.1
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2048.5 1932 57.6
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2038.8 1948 57.6
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2036.5 1911 57.9
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2027.3 1935 56.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2021.1 1888 58.1
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2018.8 1945 57.4
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2014.6 1915 57.2
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2006.1 1913 56.7
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1996.5 1893 56.6
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1996.5 1995 55.6
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1987.2 1952 55.6
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1981.5 1905 57.7
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1979.9 1916 56.2
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1972.6 1903 56.0
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1972.6 1921 55.8
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1967.2 1942 55.4
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1957.2 1976 54.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1955.6 1918 55.9
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1953.7 1917 55.5
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 1952 55.0
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 1942 55.7
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1946.4 1893 55.7
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1941.8 1937 55.2
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1939.9 1858 57.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1936.8 1917 55.4
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1931.8 1901 55.3
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1928.7 1906 55.6
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1907.5 1910 54.5
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1906.7 1917 55.1
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1899.4 1932 53.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1899.0 1999 52.6
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1898.6 1929 54.4
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1890.2 1934 53.0
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1878.2 2046 51.9
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1869.0 1900 53.4
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1865.9 1948 52.6
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1861.3 1777 58.1
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1861.3 1943 52.2
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1856.6 1899 52.3
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1851.6 1900 52.9
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1842.4 1929 51.5
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1826.6 1961 52.0
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1820.4 1866 52.4
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1815.8 1918 51.3
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1809.3 1920 52.9
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1801.2 1860 53.0
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1799.6 2026 49.8
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1784.2 1860 52.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1783.1 1852 53.1
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1757.7 1856 52.5
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1754.6 1931 51.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1743.8 1925 50.2
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1743.4 1767 53.7
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1724.9 1870 51.4
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1720.3 1873 50.4
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1710.3 1909 50.0
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1681.4 1910 50.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1650.6 2116 46.6
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1573.1 1907 48.2
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1545.8 1571 54.5
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1455.7 1537 51.1
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1394.4 1726 47.5
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1380.9 1889 43.8
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1294.3 1350 53.7
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 0.0e+00 1251.5 710 89.2
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1209.9 2150 37.4
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1177.2 1058 58.7
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1163.3 2153 36.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1151.7 1885 38.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 2.0e-307 1060.1 2079 35.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.9e-257 894.0 674 66.9
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.8e-224 783.9 782 54.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 2.8e-224 783.9 1136 42.1
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 7.1e-220 769.2 2072 30.3
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 5.1e-210 736.5 1344 36.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.7e-203 714.1 678 56.5
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 3.9e-186 657.1 766 49.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 7.0e-175 619.8 719 49.2
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.7e-152 545.4 791 43.9
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.1e-106 393.3 358 55.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.6e-105 388.7 401 51.4
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 9.3e-87 327.0 224 74.6
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.4e-71 273.9 187 70.6
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.4e-69 270.0 223 62.3
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.4e-68 264.2 473 39.7
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-55 223.8 282 45.7
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.9e-55 223.0 269 47.2
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.9e-53 215.3 271 43.9
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.2e-53 214.9 218 55.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.7e-48 199.9 124 75.8
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 2.8e-35 156.0 246 41.9
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.6e-30 140.2 121 57.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 2.7e-25 122.9 80 75.0
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.3e-24 119.8 125 51.2
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.4e-21 110.5 475 25.3
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 7.0e-18 98.2 111 45.9
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.6e-17 95.5 69 63.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 7.3e-15 88.2 64 65.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.9e-11 76.3 58 62.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.9e-11 75.5 61 54.1
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 7.8e-09 68.2 301 28.6
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.0e-08 66.2 64 45.3
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.1e-08 65.5 74 48.6
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 7.3e-07 61.6 82 40.2


User provided reference genes

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