Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.5e-200 702.6 341 100.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 3.2e-195 684.9 341 98.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 6.5e-164 580.9 354 85.6
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 6.5e-164 580.9 354 85.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 9.8e-152 540.4 356 81.2
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 8.3e-151 537.3 357 80.7
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.1e-150 537.0 352 81.8
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 3.9e-148 528.5 359 78.0
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 7.3e-147 524.2 349 79.1
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 1.2e-146 523.5 336 81.0
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 3.4e-144 515.4 351 78.3
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 3.4e-144 515.4 351 78.3
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 2.9e-143 512.3 362 75.4
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.0e-140 503.8 367 74.1
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.0e-140 503.8 364 75.0
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 5.6e-131 471.5 347 71.5
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 4.7e-122 441.8 343 68.5
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.2e-101 374.0 307 63.2
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.6e-101 373.6 307 62.9
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 7.9e-101 371.3 282 65.2
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.0e-100 369.4 330 60.3
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 5.1e-100 368.6 275 65.8
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 8.7e-100 367.9 329 58.4
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 9.6e-99 364.4 275 66.5
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.8e-98 362.8 270 65.9
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 6.2e-98 361.7 210 77.6
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 6.2e-98 361.7 210 77.6
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 6.2e-98 361.7 210 77.6
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 6.2e-98 361.7 210 77.6
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-97 360.9 269 65.1
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.8e-97 360.1 289 65.4
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 1.2e-96 357.5 206 77.2
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.2e-96 357.5 206 78.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.5e-96 357.1 270 65.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 1.5e-96 357.1 283 62.5
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 2.0e-96 356.7 322 59.9
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 4.5e-96 355.5 291 62.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 7.6e-96 354.8 206 77.2
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 1.0e-95 354.4 207 75.8
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.7e-95 353.6 298 60.1
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 3.8e-95 352.4 206 75.7
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 4.9e-95 352.1 346 55.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 4.9e-95 352.1 207 77.8
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 6.5e-95 351.7 206 76.2
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 8.4e-95 351.3 206 76.2
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.4e-94 350.5 201 77.6
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 1.9e-94 350.1 270 64.8
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.5e-94 349.7 288 61.5
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 5.5e-94 348.6 259 66.4
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-93 347.4 298 59.4
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 1.2e-93 347.4 288 60.1
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.6e-93 347.1 210 75.7
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.1e-93 346.7 205 75.6
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.1e-93 346.7 206 75.2
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 2.7e-93 346.3 206 73.8
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.7e-93 346.3 222 71.2
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.7e-93 346.3 249 66.7
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 3.5e-93 345.9 230 70.0
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 3.5e-93 345.9 207 75.4
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 6.0e-93 345.1 265 64.2
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 7.9e-93 344.7 207 76.3
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.0e-92 344.4 236 68.6
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.3e-92 344.0 207 75.4
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.3e-92 343.2 208 73.6
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.1e-91 340.9 202 75.7
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.5e-91 340.5 206 73.8
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.5e-91 340.5 314 56.7
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.9e-91 340.1 206 73.8
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 2.5e-91 339.7 207 74.9
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 3.3e-91 339.3 208 73.6
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 3.3e-91 339.3 205 75.6
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 5.7e-91 338.6 208 73.6
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 7.4e-91 338.2 201 76.6
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 7.4e-91 338.2 205 76.1
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 7.4e-91 338.2 203 76.4
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 7.4e-91 338.2 207 74.4
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.3e-90 337.4 284 60.9
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.3e-90 337.4 206 73.3
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 2.1e-90 336.7 235 66.4
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 2.1e-90 336.7 207 74.4
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.8e-90 336.3 203 73.4
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.8e-90 335.5 203 75.4
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.8e-90 335.5 209 74.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 4.8e-90 335.5 203 75.4
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 6.3e-90 335.1 206 75.7
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 8.2e-90 334.7 295 60.0
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.2e-90 334.7 208 72.1
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.4e-89 333.2 209 74.2
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 5.3e-89 332.0 207 73.4
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 5.3e-89 332.0 205 74.6
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 5.3e-89 332.0 270 61.1
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.5e-88 330.5 225 67.6
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.0e-88 330.1 195 74.9
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 2.6e-88 329.7 295 59.3
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 2.6e-88 329.7 278 61.9
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 5.9e-88 328.6 226 68.1
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.3e-87 327.4 195 75.4
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.3e-87 327.4 213 69.5
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.7e-87 327.0 195 74.9
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.7e-87 327.0 256 62.5
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.9e-87 326.2 165 89.1
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.9e-87 326.2 244 65.2
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 6.5e-87 325.1 205 73.7
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 1.1e-86 324.3 205 72.2
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.4e-86 323.9 311 53.7
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 2.5e-86 323.2 276 60.1
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 1.6e-85 320.5 204 72.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.8e-84 317.0 210 70.5
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.9e-84 315.8 222 65.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.9e-84 315.8 210 70.5
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 5.1e-84 315.5 209 68.4
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.9e-83 313.5 205 68.8
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.4e-83 311.6 246 62.2
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 9.7e-83 311.2 228 64.5
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.9e-79 299.7 313 52.4
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 5.0e-79 298.9 214 63.6
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.4e-76 290.8 198 66.7
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 9.7e-75 284.6 235 57.0
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.1e-73 281.2 231 59.7
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 4.2e-70 269.2 201 58.7
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.2e-68 262.3 162 70.4
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 8.8e-68 261.5 222 55.4
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.5e-64 249.6 151 70.9
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.3e-63 247.7 160 68.1
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 2.5e-62 243.4 217 60.4
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.6e-61 240.7 144 73.6
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 6.7e-60 235.3 224 53.6
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.3e-58 231.1 174 66.1
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 4.2e-54 216.1 242 47.5
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 2.6e-51 206.8 124 71.0
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 7.2e-46 188.7 150 60.0
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 2.0e-43 180.6 179 49.2
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.1e-41 174.9 152 55.3
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 9.5e-30 135.2 112 53.6
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.5e-22 111.3 83 55.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 7.1e-17 92.4 53 81.1
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.0e-15 88.6 65 69.2
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.2e-13 81.6 135 43.7
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 3.1e-12 77.0 47 78.7
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 6.8e-12 75.9 46 82.6
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 2.0e-11 74.3 51 72.5
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.7e-10 71.2 46 71.7
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 6.0e-08 62.8 44 68.2
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 5.1e-07 59.7 35 65.7


User provided reference genes

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