Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-167 593.2 291 100.0
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.8e-163 578.6 307 94.8
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 6.2e-163 577.4 291 97.9
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 5.2e-162 574.3 291 97.6
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.9e-160 568.5 291 95.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.5e-150 535.0 291 89.7
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.9e-149 531.6 291 89.7
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.1e-148 530.0 291 88.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 5.6e-148 527.7 291 88.0
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 5.2e-146 521.2 291 88.0
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 8.4e-144 513.8 292 88.0
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 9.6e-140 500.4 291 84.9
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.7e-136 489.6 291 81.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.3e-135 483.8 290 81.7
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.5e-121 438.3 287 74.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 5.8e-121 438.0 287 74.2
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 8.4e-120 434.1 289 73.4
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.2e-119 431.8 292 72.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 4.2e-119 431.8 292 72.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.3e-117 426.8 292 72.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 5.1e-117 424.9 287 71.4
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 8.7e-117 424.1 287 71.8
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.1e-116 423.7 287 71.1
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.5e-116 422.5 286 71.3
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 3.3e-116 422.2 289 72.0
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.3e-116 421.8 286 72.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.4e-116 421.0 286 71.3
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.3e-115 420.2 287 70.7
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.3e-115 420.2 287 70.7
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.6e-115 419.9 286 72.4
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.2e-115 419.5 289 70.9
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.8e-115 419.1 287 71.4
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.8e-115 419.1 287 68.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.8e-115 419.1 288 71.5
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 3.7e-115 418.7 286 72.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 3.7e-115 418.7 287 71.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.8e-115 418.3 287 70.7
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.1e-114 417.2 291 69.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.1e-114 417.2 288 69.8
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.8e-114 416.4 286 70.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.4e-114 416.0 301 67.8
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.1e-114 415.6 289 69.2
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 3.1e-114 415.6 288 70.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-114 415.6 286 72.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 5.3e-114 414.8 287 70.4
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 6.9e-114 414.5 286 71.0
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.2e-113 413.7 293 69.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.2e-113 413.7 286 69.2
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.2e-113 413.7 287 71.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-113 412.9 287 70.0
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-113 412.9 287 70.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.0e-113 412.9 284 69.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.6e-113 412.5 291 69.8
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 4.5e-113 411.8 291 69.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 71.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 68.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.5e-113 411.8 286 70.3
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 5.9e-113 411.4 286 70.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.9e-113 411.4 291 71.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 71.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 7.7e-113 411.0 286 69.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.0e-112 410.6 286 69.2
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.0e-112 410.6 286 69.6
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.3e-112 410.2 287 69.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.9e-112 409.1 287 67.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.0e-112 408.3 286 68.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 6.5e-112 407.9 285 69.5
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 8.5e-112 407.5 287 69.7
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 8.5e-112 407.5 291 68.0
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.1e-111 407.1 281 70.5
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.1e-111 407.1 286 69.6
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.5e-111 406.0 328 64.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.5e-111 406.0 286 68.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.2e-111 404.4 297 66.3
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-110 402.9 287 69.3
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-110 402.9 277 69.0
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.7e-110 402.5 285 68.8
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.6e-110 401.7 291 68.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 6.1e-110 401.4 286 69.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.1e-110 401.4 291 67.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 7.9e-110 401.0 324 62.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.0e-109 399.1 291 68.4
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.0e-108 396.4 287 66.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.8e-107 392.5 286 67.5
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.7e-107 392.1 286 68.2
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 6.3e-107 391.3 291 66.7
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.8e-106 389.8 254 74.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.3e-106 388.3 254 74.4
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 6.9e-106 387.9 294 65.6
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.2e-104 382.9 287 65.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 2.2e-104 382.9 295 64.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 8.5e-104 380.9 254 72.8
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.2e-103 379.0 255 72.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-102 376.3 326 60.4
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-102 376.3 326 60.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 6.1e-102 374.8 240 74.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.3e-100 369.0 284 64.8
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.3e-100 369.0 287 63.8
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.7e-100 368.2 254 69.3
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.3e-99 364.8 286 64.0
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.5e-97 360.1 255 68.6
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.5e-97 360.1 288 62.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.7e-97 357.8 286 62.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.3e-96 357.1 280 61.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 9.4e-95 350.9 278 64.0
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.6e-94 350.1 290 62.1
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.1e-94 349.7 288 61.5
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.4e-93 347.1 280 61.1
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.9e-93 345.5 232 72.0
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 4.4e-92 342.0 307 63.5
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.0e-88 330.9 241 67.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 5.0e-88 328.6 284 59.2
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 5.0e-88 328.6 293 57.3
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.8e-85 320.1 258 61.6
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.8e-85 317.8 208 74.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 9.1e-82 307.8 284 54.9
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.0e-81 306.6 288 54.9
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.0e-80 304.3 280 54.3
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.4e-79 297.7 289 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 4.8e-75 285.4 237 60.3
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.2e-71 271.6 228 63.6
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 7.8e-65 251.5 192 65.1
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 3.9e-64 249.2 169 68.6
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 3.7e-51 206.1 151 71.5
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 7.8e-49 198.4 152 69.1
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.3e-48 197.6 151 69.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.6e-46 189.5 263 42.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.3e-45 186.8 130 66.9
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.6e-44 183.3 138 70.3
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.7e-43 179.5 272 37.9
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.0e-40 171.4 98 87.8
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.8e-37 160.6 153 58.2
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.7e-32 144.1 113 57.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-29 134.4 272 32.4
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 6.9e-29 132.1 392 28.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.1e-23 114.8 82 67.1
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 5.6e-23 112.5 169 39.1
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.6e-22 109.8 100 53.0
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-21 108.2 74 68.9
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.7e-19 100.9 88 61.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.1e-17 94.0 92 52.2
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.7e-17 93.6 92 53.3
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 2.3e-16 90.5 88 54.5
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 2.3e-16 90.5 88 54.5
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.3e-15 86.3 193 31.1
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.8e-14 83.6 69 59.4
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-14 83.6 60 66.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 8.1e-14 82.0 65 61.5
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.1e-14 82.0 109 43.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 1.8e-13 80.9 61 57.4
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.8e-11 73.2 56 64.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.1e-10 71.6 93 47.3
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.4e-10 71.2 79 44.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.1e-10 68.9 46 65.2
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.1e-10 68.9 46 65.2
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.5e-09 66.6 46 60.9
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.0e-08 63.5 122 37.7
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 6.7e-08 62.4 140 31.4
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.7e-07 59.3 42 66.7
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 1.3e-06 58.2 47 57.4
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 3.7e-06 56.6 47 55.3


User provided reference genes

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