Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 8.4e-38 159.8 80 100.0
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 1.9e-37 158.7 80 97.5
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 1.9e-37 158.7 80 97.5
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 4.2e-37 157.5 80 96.2
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 6.7e-35 150.2 81 92.6
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 3.4e-31 137.9 82 85.4
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 5.9e-31 137.1 83 86.7
BcaC01g00889 Brassica carinata HOM05D006691 ORTHO05D007620 4.2e-29 131.0 81 84.0
BraA08t33636Z Brassica rapa HOM05D006691 ORTHO05D007620 1.2e-28 129.4 81 82.7
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.6e-28 129.0 83 81.9
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 1.0e-27 126.3 83 81.9
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 1.4e-27 125.9 83 80.7
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 1.4e-27 125.9 83 80.7
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 8.8e-27 123.2 83 78.3
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 8.8e-27 123.2 83 78.3
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 1.5e-26 122.5 83 77.1
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 2.8e-25 118.2 85 77.6
BolC3t20851H Brassica oleracea HOM05D006691 ORTHO05D007620 3.7e-25 117.9 85 75.3
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 7.2e-21 103.6 84 65.5
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 1.2e-20 102.8 62 80.6
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 1.4e-19 99.4 84 64.3
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 2.2e-17 92.0 85 61.2
A08p16710 Brassica napus HOM05D006691 ORTHO05D007620 4.8e-17 90.9 55 83.6
C03p85630 Brassica napus HOM05D006691 ORTHO05D007620 4.8e-17 90.9 55 83.6
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 1.4e-16 89.4 84 59.5
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 7.2e-13 77.0 87 52.9
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 4.7e-12 74.3 84 48.8
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.3e-11 72.0 94 46.8
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.3e-11 72.0 95 47.4
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 5.2e-11 70.9 85 47.1
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 5.2e-11 70.9 88 47.7
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 2.6e-10 68.6 94 46.8
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 3.3e-10 68.2 76 53.9
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 3.3e-10 68.2 81 46.9
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 7.5e-10 67.0 91 45.1
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 9.7e-10 66.6 86 47.7
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.3e-09 66.2 90 44.4
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 1.7e-09 65.9 96 45.8
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.2e-09 65.5 80 46.2
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.2e-09 65.5 80 46.2
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 2.2e-09 65.5 97 43.3
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.2e-09 65.5 90 44.4
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 2.8e-09 65.1 94 43.6
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 2.8e-09 65.1 81 46.9
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.8e-09 65.1 81 46.9
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 3.7e-09 64.7 96 43.8
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 3.7e-09 64.7 81 49.4
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 3.7e-09 64.7 94 42.6
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 6.3e-09 63.9 89 46.1
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.1e-08 63.2 80 45.0
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 1.1e-08 63.2 88 44.3
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 1.4e-08 62.8 90 42.2
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.4e-08 62.8 90 42.2
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 1.4e-08 62.8 90 41.1
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 1.8e-08 62.4 87 43.7
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 1.8e-08 62.4 90 43.3
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 1.8e-08 62.4 88 45.5
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 3.1e-08 61.6 89 44.9
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 3.1e-08 61.6 88 42.0
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 3.1e-08 61.6 99 42.4
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 4.1e-08 61.2 81 45.7
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 4.1e-08 61.2 97 44.3
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 5.3e-08 60.8 90 44.4
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 5.3e-08 60.8 95 43.2
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 7.0e-08 60.5 91 42.9
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 7.0e-08 60.5 89 44.9
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 9.1e-08 60.1 88 40.9
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 9.1e-08 60.1 90 38.9
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 9.1e-08 60.1 92 39.1
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 9.1e-08 60.1 91 42.9
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.2e-07 59.7 88 44.3
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.2e-07 59.7 90 41.1
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.2e-07 59.7 96 40.6
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.2e-07 59.7 101 38.6
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 1.2e-07 59.7 89 44.9
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-07 58.9 96 40.6
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 2.0e-07 58.9 95 43.2
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 2.0e-07 58.9 85 38.8
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 2.7e-07 58.5 94 41.5
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 2.7e-07 58.5 97 39.2
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 3.5e-07 58.2 96 39.6
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 4.5e-07 57.8 95 40.0
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.7e-07 57.0 41 61.0
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.7e-07 57.0 93 43.0
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 7.7e-07 57.0 84 40.5
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.0e-06 56.6 40 60.0
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 1.0e-06 56.6 49 53.1
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 1.3e-06 56.2 96 39.6
AT4G34600 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.9e-06 55.1 45 73.3
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.9e-06 55.1 40 60.0
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 2.9e-06 55.1 86 39.5
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 2.9e-06 55.1 87 37.9
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 3.8e-06 54.7 89 39.3
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 3.8e-06 54.7 85 40.0
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 5.0e-06 54.3 42 59.5


User provided reference genes

Program Settings