Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1598.2 1179 100.0
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1408.3 1217 90.7
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 0.0e+00 1397.1 1178 93.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 0.0e+00 1340.9 1178 89.4
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 0.0e+00 1260.4 1175 81.6
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 0.0e+00 1169.8 1187 77.7
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 0.0e+00 1129.4 1159 80.9
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 0.0e+00 1092.8 1164 76.7
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 0.0e+00 1082.4 1166 76.2
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 3.0e-285 985.7 1170 75.0
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.8e-259 899.0 991 81.7
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 1.4e-216 757.7 1161 65.7
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 2.5e-186 657.1 703 72.4
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 1.9e-141 508.1 1114 55.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 3.3e-138 497.3 1170 53.1
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.2e-137 495.4 1146 56.7
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.4e-136 491.1 1146 56.5
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 2.6e-135 487.6 1146 56.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.4e-135 486.9 1177 51.8
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.4e-133 481.1 1158 52.0
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 3.5e-132 477.2 281 86.1
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.9e-130 471.5 1164 52.4
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 4.3e-130 470.3 1142 47.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.6e-129 468.4 1177 47.3
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 3.1e-128 464.2 1142 47.3
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.1e-128 464.2 1153 50.3
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 4.0e-128 463.8 1157 48.2
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.3e-126 458.8 1169 55.1
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.2e-126 458.0 1198 44.6
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 6.4e-126 456.4 1207 49.1
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 9.3e-125 452.6 1182 53.4
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.3e-123 448.7 967 61.5
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 3.0e-123 447.6 1139 55.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 1.3e-121 442.2 1161 41.2
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.1e-120 439.1 1105 50.0
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.0e-119 434.9 1179 45.4
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 7.6e-119 433.0 1123 51.4
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 3.2e-117 427.6 1127 49.4
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.2e-116 425.6 1127 50.3
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.0e-115 422.5 1165 51.4
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 2.3e-115 421.4 1174 49.0
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 3.0e-115 421.0 1194 54.3
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.7e-115 419.5 1127 53.1
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 4.3e-114 417.2 1185 49.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 5.6e-114 416.8 1204 51.7
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.3e-113 415.6 1174 49.0
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.8e-113 414.5 1126 54.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.8e-113 414.5 1156 51.4
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.1e-112 412.5 1200 53.9
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.4e-112 412.1 711 73.8
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.8e-112 411.8 1130 52.9
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 2.4e-112 411.4 1177 52.8
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 3.1e-112 411.0 1165 53.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.6e-111 407.9 1100 52.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 2.2e-110 404.8 1153 50.0
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 4.9e-110 403.7 1164 52.5
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.4e-109 402.1 1161 47.3
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 1.4e-109 402.1 1144 49.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.9e-109 401.7 1170 52.1
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 3.5e-108 397.5 1171 52.9
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 4.6e-108 397.1 1158 52.3
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 8.7e-107 392.9 1229 42.0
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 8.7e-107 392.9 902 61.9
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.3e-106 391.0 1146 43.5
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.3e-106 391.0 1105 50.0
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 5.7e-106 390.2 1205 48.2
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 2.2e-105 388.3 866 63.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.1e-104 386.0 1145 47.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.4e-104 385.6 914 60.5
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 4.1e-104 384.0 1147 44.4
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.0e-103 381.7 851 55.5
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.4e-103 380.9 1100 50.3
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.4e-103 380.9 952 59.1
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 4.5e-103 380.6 1020 49.4
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.3e-102 379.0 1191 48.3
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 1.7e-102 378.6 1248 41.3
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.4e-101 375.6 1153 49.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 5.5e-101 373.6 1109 48.8
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 5.7e-98 363.6 1139 49.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.8e-97 361.3 708 71.0
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 4.8e-97 360.5 1144 49.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 4.8e-97 360.5 1099 53.0
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.3e-96 357.1 1163 47.0
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 2.0e-95 355.1 983 47.0
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 5.1e-91 340.5 1209 45.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 5.7e-90 337.0 1147 50.7
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-89 335.9 1211 45.7
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 4.8e-89 334.0 1200 41.9
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.4e-88 331.6 297 56.6
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.0e-87 328.6 717 59.7
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 6.1e-84 317.0 1080 42.1
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.8e-83 315.5 1157 45.7
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.0e-83 314.7 795 53.1
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.7e-82 310.5 1153 46.9
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 2.2e-81 308.5 910 41.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.7e-78 298.9 717 56.6
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.5e-71 274.2 1086 51.6
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 9.8e-58 229.9 701 46.1
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.6e-47 196.1 189 55.0
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.7e-46 192.6 724 48.9
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 6.4e-41 174.1 284 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.5e-39 168.3 715 60.0
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.4e-35 156.4 727 48.0
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.8e-35 156.0 259 78.8
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.1e-32 144.1 303 34.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.7e-30 139.4 311 32.2
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 8.6e-30 137.1 247 77.3
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.2e-28 133.3 221 86.4
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.1e-28 132.5 148 49.3
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 2.8e-28 132.1 255 66.3
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.7e-28 131.3 152 43.4
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.4e-27 129.8 714 57.3
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.4e-27 129.0 109 59.6
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.9e-27 127.1 764 55.5
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.0e-26 125.9 242 76.4
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.8e-23 114.0 129 49.6
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.7e-22 110.5 721 53.1
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.3e-21 108.6 107 50.5
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 4.0e-19 101.7 312 25.3
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 7.6e-18 97.4 98 45.9
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 5.1e-14 84.7 134 41.0
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 6.0e-07 61.2 64 82.8
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 6.0e-07 61.2 275 25.5


User provided reference genes

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