Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 1.4e-66 256.1 125 100.0
BraA01t00304Z Brassica rapa HOM05D003405 ORTHO05D003920 3.1e-47 191.8 116 83.6
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 4.9e-32 141.4 159 52.2
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 4.9e-32 141.4 159 52.2
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 4.9e-32 141.4 159 52.2
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 2.4e-31 139.0 155 49.7
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 4.1e-31 138.3 159 50.9
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 2.0e-30 136.0 155 48.4
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 3.5e-30 135.2 156 49.4
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 3.5e-30 135.2 155 48.4
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.9e-30 134.4 129 55.8
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 7.8e-30 134.0 133 54.9
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 1.3e-29 133.3 152 49.3
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 1.3e-29 133.3 151 49.0
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 5.0e-29 131.3 155 51.0
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 2.5e-28 129.0 159 45.9
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 5.6e-28 127.9 159 45.9
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 5.6e-28 127.9 146 52.1
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 2.1e-27 125.9 156 44.2
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.8e-27 125.6 159 45.3
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 4.7e-27 124.8 160 45.0
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 6.1e-27 124.4 163 43.6
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 6.1e-27 124.4 146 50.7
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 8.0e-27 124.0 158 44.3
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 1.0e-26 123.6 146 46.6
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 1.0e-26 123.6 149 47.7
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 1.0e-26 123.6 154 47.4
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.4e-26 123.2 174 43.7
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.4e-26 123.2 174 43.7
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 3.0e-26 122.1 154 43.5
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.5e-25 119.8 143 48.3
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 1.5e-25 119.8 146 45.9
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.0e-25 119.4 156 43.6
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 2.6e-25 119.0 151 44.4
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 2.6e-25 119.0 153 43.8
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 3.4e-25 118.6 156 43.6
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 3.4e-25 118.6 156 44.2
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 4.9e-24 114.8 157 43.9
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 1.4e-23 113.2 114 53.5
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 1.4e-23 113.2 150 44.7
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 1.4e-23 113.2 150 44.7
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.4e-23 113.2 150 44.7
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.4e-23 113.2 149 45.0
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 4.1e-23 111.7 126 51.6
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 1.2e-22 110.2 126 51.6
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 2.0e-22 109.4 153 45.8
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 2.0e-22 109.4 153 45.8
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 2.7e-22 109.0 149 47.0
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 2.7e-22 109.0 151 41.1
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 4.6e-22 108.2 156 42.9
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.6e-22 108.2 139 46.8
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 4.6e-22 108.2 123 49.6
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 6.0e-22 107.8 191 36.1
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 7.8e-22 107.5 150 44.0
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.0e-21 107.1 129 47.3
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 1.3e-21 106.7 151 39.1
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 1.7e-21 106.3 131 48.9
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.0e-21 105.5 140 45.0
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 3.9e-21 105.1 146 41.8
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 6.6e-21 104.4 66 77.3
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 2.5e-20 102.4 111 50.5
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 3.3e-20 102.1 123 46.3
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 3.3e-20 102.1 123 46.3
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 1.6e-19 99.8 123 45.5
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 4.7e-19 98.2 121 44.6
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 1.1e-18 97.1 109 54.1
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 1.1e-18 97.1 109 54.1
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 1.1e-18 97.1 109 54.1
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 1.1e-18 97.1 113 52.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 3.1e-18 95.5 109 53.2
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 3.1e-18 95.5 109 53.2
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 4.0e-18 95.1 113 51.3
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.0e-18 95.1 107 49.5
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 4.0e-18 95.1 113 51.3
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.0e-18 95.1 100 52.0
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 5.2e-18 94.7 111 48.6
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 5.2e-18 94.7 111 48.6
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 5.2e-18 94.7 159 37.1
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 6.8e-18 94.4 123 49.6
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 6.8e-18 94.4 107 49.5
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 8.9e-18 94.0 113 50.4
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 8.9e-18 94.0 111 48.6
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 1.5e-17 93.2 122 42.6
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 2.0e-17 92.8 111 46.8
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 2.0e-17 92.8 111 47.7
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 2.6e-17 92.4 111 47.7
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 2.6e-17 92.4 111 47.7
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 3.4e-17 92.0 113 48.7
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 3.4e-17 92.0 111 46.8
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 3.4e-17 92.0 111 46.8
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 3.4e-17 92.0 107 49.5
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 4.4e-17 91.7 110 48.2
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 5.8e-17 91.3 111 49.5
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 5.8e-17 91.3 111 46.8
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 5.8e-17 91.3 111 45.9
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 5.8e-17 91.3 111 45.9
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 7.5e-17 90.9 111 46.8
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 7.5e-17 90.9 111 46.8
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 9.8e-17 90.5 114 46.5
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 9.8e-17 90.5 111 46.8
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.8e-17 90.5 111 46.8
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.8e-17 90.5 111 46.8
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 9.8e-17 90.5 116 45.7
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 9.8e-17 90.5 111 46.8
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.3e-16 90.1 117 45.3
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.7e-16 89.7 117 45.3
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 1.7e-16 89.7 111 45.9
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.2e-16 89.4 111 45.9
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 3.7e-16 88.6 111 45.9
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.7e-16 88.6 111 45.9
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.7e-16 88.6 111 45.9
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.7e-16 88.6 111 45.9
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 6.4e-16 87.8 107 47.7
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 6.4e-16 87.8 111 44.1
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 8.3e-16 87.4 107 45.8
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 1.1e-15 87.0 102 45.1
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 1.9e-15 86.3 111 44.1
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 2.4e-15 85.9 131 43.5
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 2.4e-15 85.9 111 45.0
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 2.4e-15 85.9 107 45.8
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 3.2e-15 85.5 64 65.6
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 4.1e-15 85.1 112 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 7.0e-15 84.3 122 39.3
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 9.2e-15 84.0 153 39.2
AL3G51990 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 2.1e-14 82.8 58 67.2
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 7.8e-14 80.9 117 43.6
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 1.3e-13 80.1 82 53.7
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.3e-13 79.3 124 40.3
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.3e-13 79.3 124 40.3
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 3.0e-13 79.0 100 46.0
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 3.9e-13 78.6 98 41.8
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 6.6e-13 77.8 74 55.4
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 8.6e-13 77.4 79 53.2
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 4.3e-12 75.1 97 45.4
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 1.6e-11 73.2 105 41.0
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.8e-11 72.4 119 36.1
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 6.2e-11 71.2 80 46.2
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 2.3e-10 69.3 107 39.3
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 3.1e-10 68.9 126 36.5
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 6.8e-10 67.8 80 47.5
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 2.6e-09 65.9 153 29.4
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 4.4e-09 65.1 52 61.5
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 7.5e-09 64.3 80 45.0
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 9.9e-09 63.9 40 67.5
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 2.2e-08 62.8 34 82.4
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 2.2e-08 62.8 80 45.0
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 2.9e-08 62.4 77 46.8
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.9e-08 62.4 94 35.1
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 3.7e-08 62.0 34 85.3
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 3.7e-08 62.0 130 31.5
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 4.9e-08 61.6 78 46.2
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 8.3e-08 60.8 76 43.4
TAR628G0767 Trochodendron aralioides HOM05D003405 ORTHO05D003920 8.3e-08 60.8 51 60.8
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.1e-07 60.5 76 42.1
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.1e-07 60.5 78 46.2
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.1e-07 60.5 78 46.2
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.9e-07 59.7 76 42.1
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 2.4e-07 59.3 154 29.2
Ca_21295_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 7.1e-07 57.8 98 36.7
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.2e-07 57.4 40 62.5
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.2e-06 57.0 78 43.6
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 1.6e-06 56.6 119 33.6
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 3.5e-06 55.5 80 40.0
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 7.8e-06 54.3 50 54.0


User provided reference genes

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