Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 3.4e-125 451.8 256 100.0
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.1e-118 428.7 256 96.5
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 4.4e-80 302.0 270 72.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.9e-68 262.3 272 66.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 5.8e-64 248.4 277 65.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.4e-62 243.0 277 64.6
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.2e-62 242.7 280 63.2
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.1e-62 241.5 289 62.6
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 4.6e-61 238.8 274 64.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-61 238.8 274 64.2
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.9e-60 235.7 279 63.8
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.2e-57 225.3 277 58.8
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.5e-53 212.6 270 60.4
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 6.0e-53 211.8 270 59.6
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 3.3e-51 206.1 268 58.6
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 1.5e-48 197.2 268 57.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.7e-44 181.4 270 53.0
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.9e-43 180.3 275 51.6
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.8e-42 176.4 279 52.7
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.2e-39 166.8 272 52.6
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 6.4e-39 165.2 265 51.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 6.0e-37 158.7 266 48.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 6.7e-36 155.2 266 47.7
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 8.7e-36 154.8 260 50.0
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.5e-35 154.1 300 46.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-35 153.3 264 52.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-35 152.9 267 50.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 5.6e-35 152.1 258 49.6
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 4.8e-34 149.1 259 52.5
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 4.8e-34 149.1 259 52.5
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.4e-33 146.7 292 47.9
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.1e-33 146.4 304 46.7
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.0e-25 118.2 264 40.5
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-23 113.2 266 40.2
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.9e-23 113.2 263 44.5
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.4e-22 110.9 299 35.5
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.5e-22 110.2 298 35.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 9.3e-22 108.2 304 36.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.2e-21 107.8 305 34.8
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.7e-21 106.7 302 34.8
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.5e-21 106.3 306 35.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.6e-21 105.9 270 43.3
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 7.9e-21 105.1 331 40.2
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.9e-21 105.1 300 35.7
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.8e-20 104.0 303 37.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 6.7e-20 102.1 312 38.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.9e-19 100.5 298 33.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.3e-19 99.8 281 34.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 3.3e-19 99.8 298 38.9
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 4.3e-19 99.4 288 34.0
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 9.7e-19 98.2 297 35.7
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 9.7e-19 98.2 315 33.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-18 97.4 296 34.8
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-18 97.4 296 34.8
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.6e-18 97.4 299 34.8
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 8.2e-18 95.1 295 32.9
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.1e-17 92.8 134 60.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.3e-17 92.4 301 38.5
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 5.3e-17 92.4 296 35.8
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 9.0e-17 91.7 295 32.5
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.2e-16 91.3 302 34.8
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.5e-16 90.9 302 34.8
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.5e-16 90.9 316 37.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.0e-16 90.5 305 37.0
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.0e-16 90.5 270 35.9
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.4e-16 89.7 306 32.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.5e-16 89.4 297 30.6
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-16 89.4 286 32.5
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.5e-16 89.4 286 32.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 7.7e-16 88.6 304 33.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.0e-15 88.2 180 38.3
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.0e-15 88.2 306 33.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.7e-15 87.4 299 34.1
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.7e-15 87.4 259 37.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.2e-15 87.0 309 32.0
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.2e-15 87.0 303 37.0
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.2e-15 87.0 300 32.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.9e-15 86.7 307 31.3
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.8e-15 86.3 296 33.1
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.8e-15 86.3 303 33.3
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.8e-15 86.3 305 33.1
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 6.5e-15 85.5 288 31.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.1e-14 84.7 308 37.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.5e-14 83.6 301 31.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 5.5e-14 82.4 304 31.2
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 5.5e-14 82.4 304 31.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 9.4e-14 81.6 319 33.9
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 9.4e-14 81.6 299 31.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 9.4e-14 81.6 323 32.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-13 81.3 310 31.9
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.6e-13 80.9 310 34.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.6e-13 80.9 183 39.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 2.7e-13 80.1 301 33.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.7e-13 80.1 301 33.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.7e-13 80.1 276 33.7
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.6e-13 79.7 299 31.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 3.6e-13 79.7 306 36.3
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.9e-13 78.6 301 33.6
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 7.9e-13 78.6 301 33.2
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 7.9e-13 78.6 318 32.4
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 7.9e-13 78.6 291 32.3
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.4e-12 77.8 296 31.4
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.4e-12 77.8 305 32.5
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.3e-12 77.0 287 35.9
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 3.0e-12 76.6 283 37.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 5.1e-12 75.9 273 36.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 6.7e-12 75.5 304 29.9
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.7e-12 75.5 289 31.5
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 6.7e-12 75.5 268 32.8
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-11 74.7 301 32.6
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 7.4e-11 72.0 301 31.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.3e-10 71.2 308 29.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.3e-10 71.2 298 30.2
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.3e-10 71.2 303 30.7
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.7e-10 70.9 279 30.5
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.7e-10 70.9 199 34.2
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.2e-10 70.5 305 30.2
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 3.7e-10 69.7 256 30.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.7e-10 69.7 291 30.6
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.8e-10 69.3 256 30.1
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 6.3e-10 68.9 307 31.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.3e-10 68.9 304 28.9
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 8.2e-10 68.6 189 37.6
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 8.2e-10 68.6 299 30.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.2e-10 68.6 300 28.7
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.1e-09 68.2 298 31.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.1e-09 68.2 304 30.6
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.1e-09 68.2 173 35.8
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.4e-09 67.8 199 35.7
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.8e-09 67.4 313 29.7
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.8e-09 67.4 313 28.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.1e-09 66.6 173 35.8
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 4.1e-09 66.2 300 30.0
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 5.3e-09 65.9 177 37.9
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.3e-09 65.9 170 39.4
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.9e-09 65.5 311 33.4
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 9.1e-09 65.1 313 33.2
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-08 63.5 300 29.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.6e-08 63.5 177 36.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.4e-08 63.2 312 34.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 5.9e-08 62.4 312 26.9
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 5.9e-08 62.4 202 32.2
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.9e-08 62.4 173 35.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.0e-07 61.6 313 26.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-07 61.2 319 34.2
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.7e-07 60.8 203 33.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.9e-07 60.1 300 29.7
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.1e-06 58.2 276 31.2
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.4e-06 57.8 176 35.2
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.2e-06 56.2 272 28.3
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.4e-06 55.1 278 27.7


User provided reference genes

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