Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-275 952.2 453 100.0
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.1e-274 948.3 453 99.1
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.4e-270 934.9 453 97.6
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.2e-269 932.6 453 97.4
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-269 932.6 453 97.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 4.6e-250 867.5 452 90.0
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 6.1e-250 867.1 453 90.1
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 7.4e-248 860.1 452 90.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.7e-244 849.0 453 88.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 5.0e-244 847.4 453 87.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 87.6
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 8.5e-244 846.7 452 87.6
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 3.2e-243 844.7 452 87.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.6e-242 841.3 453 87.0
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.6e-242 841.3 453 87.2
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.6e-242 841.3 453 87.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 6.7e-241 837.0 452 86.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.0e-240 835.5 453 86.8
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.3e-240 834.7 453 86.5
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.8e-239 831.6 453 86.5
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.3e-239 830.5 453 86.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.1e-238 829.7 452 85.8
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 8.5e-236 820.1 453 83.9
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.6e-234 814.7 451 83.1
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.1e-234 813.9 453 83.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-233 813.1 451 83.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 3.0e-233 811.6 453 82.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.0e-233 811.2 453 82.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.0e-233 811.2 451 82.5
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.8e-233 810.1 453 82.3
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.3e-232 808.1 453 82.3
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.4e-232 807.7 449 83.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 9.7e-232 806.6 453 82.1
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 3.7e-231 804.7 452 84.3
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 8.2e-231 803.5 453 81.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.2e-231 803.5 451 83.1
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.1e-230 803.1 483 79.3
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.8e-230 802.4 449 83.3
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.1e-230 801.6 453 81.2
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.1e-230 801.2 446 82.3
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.1e-230 800.0 463 80.3
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-229 799.7 452 81.6
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.2e-229 799.7 453 81.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.7e-229 798.5 450 82.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 3.5e-229 798.1 453 80.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.5e-229 797.7 447 83.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 4.5e-229 797.7 443 83.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.5e-229 797.7 451 82.3
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 5.9e-229 797.3 449 82.0
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.0e-228 796.6 448 81.5
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.3e-228 796.2 448 83.3
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.3e-228 796.2 448 83.3
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-228 796.2 453 79.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 2.2e-228 795.4 449 82.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 3.8e-228 794.7 449 81.7
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 5.0e-228 794.3 453 80.6
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.5e-227 792.7 447 81.7
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.5e-227 792.7 453 81.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.9e-227 792.3 448 82.6
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.5e-227 792.0 453 81.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 3.2e-227 791.6 448 81.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.2e-227 791.6 449 80.6
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 7.2e-227 790.4 451 80.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.2e-227 790.4 453 81.0
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.6e-226 789.3 448 81.2
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.6e-226 789.3 453 80.1
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.1e-226 788.9 451 81.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.1e-226 788.9 452 81.4
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.7e-226 788.5 453 80.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.7e-226 788.5 451 81.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.7e-226 788.5 451 80.9
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.0e-225 786.6 453 79.2
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.8e-225 785.8 451 80.5
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.8e-225 785.8 448 80.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.8e-225 785.8 449 80.4
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.8e-225 785.8 453 80.4
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.0e-225 785.0 449 81.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 5.2e-225 784.3 447 81.2
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 6.8e-225 783.9 447 81.7
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.5e-224 782.7 451 79.8
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.0e-224 782.3 453 80.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.6e-224 781.9 451 80.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 4.4e-224 781.2 430 84.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.5e-224 780.4 451 80.7
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 9.8e-224 780.0 449 80.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.8e-223 777.7 453 79.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.3e-223 776.9 453 79.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.4e-222 775.4 452 79.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 5.4e-222 774.2 451 80.3
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.2e-221 773.1 451 78.7
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.0e-221 772.3 453 79.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 7.7e-221 770.4 440 80.2
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.3e-220 768.8 451 78.0
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 6.5e-220 767.3 443 80.4
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.5e-219 765.4 452 78.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.2e-219 764.6 471 76.0
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 7.2e-219 763.8 447 78.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.6e-218 762.7 495 73.7
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.6e-218 761.5 446 79.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.1e-218 760.8 433 80.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.8e-217 759.2 447 79.2
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 5.9e-213 744.2 449 75.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-212 743.0 447 78.3
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.3e-212 742.3 412 83.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.9e-212 741.9 449 75.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 6.4e-207 724.2 451 74.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.4e-206 723.0 448 76.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 6.6e-204 714.1 453 74.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.5e-200 703.0 448 73.2
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.2e-198 695.3 446 72.2
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-195 685.6 379 83.6
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.1e-193 680.2 388 80.2
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.2e-192 676.8 457 71.1
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.4e-192 675.2 447 72.3
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.2e-190 668.7 464 70.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.4e-190 667.9 376 79.8
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.3e-188 662.5 452 68.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.0e-172 609.0 452 66.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.5e-171 605.9 334 84.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 9.0e-169 597.4 456 66.0
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.2e-160 570.5 432 65.7
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.2e-150 535.8 298 84.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.6e-149 531.9 295 83.7
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.8e-146 521.9 451 59.4
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.5e-142 509.6 316 73.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-137 493.4 288 78.1
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 9.1e-129 464.5 379 59.9
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.2e-125 454.1 445 54.4
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.3e-114 417.5 295 65.8
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.8e-100 368.6 280 63.2
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 7.0e-81 305.4 200 68.0
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.0e-75 287.3 162 81.5
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.4e-65 254.6 277 48.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.4e-65 254.6 145 77.9
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.2e-64 251.5 198 65.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-64 251.1 140 82.1
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.7e-64 250.4 153 71.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-63 247.3 147 78.2
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-62 244.6 147 75.5
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.4e-60 238.0 153 67.3
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.8e-58 229.9 156 67.3
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.9e-55 219.9 135 79.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 2.8e-45 187.2 138 63.0
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.8e-45 187.2 111 79.3
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.0e-35 154.5 117 61.5
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.4e-35 153.7 132 56.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.6e-24 116.7 55 94.5
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.8e-21 106.7 68 69.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.3e-18 98.6 78 57.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 8.5e-18 95.9 73 58.9
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.5e-17 93.2 73 57.5
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-15 89.0 67 58.2
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.1e-15 86.7 67 59.7
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 8.8e-15 85.9 65 58.5
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-14 85.1 83 51.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 9.7e-14 82.4 80 48.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 7.0e-12 76.3 49 65.3
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.7e-11 72.8 50 66.0
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 3.8e-10 70.5 41 73.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.7e-08 64.3 65 46.2
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 3.6e-08 63.9 163 28.2
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 2.3e-07 61.2 35 77.1


User provided reference genes

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