Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.5e-23 112.1 60 100.0
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 4.1e-21 104.0 59 91.5
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.6e-20 102.1 59 89.8
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 6.0e-20 100.1 54 98.1
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.6e-17 90.9 59 81.4
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 3.6e-17 90.9 59 81.4
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.3e-16 88.2 59 76.3
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 6.8e-16 86.7 59 76.3
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.5e-15 85.5 59 74.6
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.6e-15 84.7 59 74.6
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.6e-15 84.7 59 74.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 2.2e-14 81.6 59 72.9
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.2e-13 77.8 59 72.9
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.2e-13 77.8 59 72.9
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.2e-13 77.8 59 72.9
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.5e-10 68.2 87 50.6
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.3e-10 66.6 56 60.7
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.3e-10 66.6 59 64.4
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.3e-10 66.6 59 57.6
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.1e-09 65.1 59 59.3
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.8e-09 64.7 59 54.2
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 3.6e-09 64.3 56 58.9
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.6e-09 64.3 59 57.6
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 4.7e-09 63.9 56 58.9
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.7e-09 63.9 56 58.9
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.2e-09 63.5 56 58.9
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.2e-09 63.5 59 59.3
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 8.1e-09 63.2 56 58.9
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 8.1e-09 63.2 60 56.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-08 62.8 59 52.5
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.4e-08 62.4 53 60.4
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.3e-08 61.6 60 58.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.3e-08 61.6 59 54.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.3e-08 61.6 59 52.5
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 3.1e-08 61.2 59 52.5
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 3.1e-08 61.2 59 52.5
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.1e-08 61.2 56 55.4
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 5.2e-08 60.5 56 53.6
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 8.9e-08 59.7 59 52.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 8.9e-08 59.7 56 53.6
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.2e-07 59.3 56 51.8
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.0e-07 58.5 59 49.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 2.0e-07 58.5 59 49.2
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.0e-07 58.5 59 52.5
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.6e-07 58.2 59 49.2
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 5.8e-07 57.0 62 51.6
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.8e-07 57.0 56 53.6
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.8e-07 57.0 59 49.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 7.6e-07 56.6 59 50.8
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 9.9e-07 56.2 59 50.8
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 9.9e-07 56.2 59 49.2
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.9e-07 56.2 59 47.5
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.3e-06 55.8 59 49.2
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-06 55.8 53 52.8
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.3e-06 55.8 53 52.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-06 55.8 62 53.2
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.3e-06 55.8 59 47.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.3e-06 55.8 59 52.5
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.7e-06 55.5 59 54.2
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.2e-06 55.1 62 51.6
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.2e-06 55.1 59 54.2
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 2.2e-06 55.1 59 49.2
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.9e-06 54.7 62 51.6
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.9e-06 54.7 59 49.2
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.7e-06 54.3 59 49.2
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 3.7e-06 54.3 57 52.6
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 3.7e-06 54.3 59 47.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 3.7e-06 54.3 62 50.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.9e-06 53.9 59 52.5
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 6.4e-06 53.5 59 52.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 8.4e-06 53.1 59 54.2
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 8.4e-06 53.1 59 55.9
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 8.4e-06 53.1 57 50.9


User provided reference genes

Program Settings