Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 7.5e-165 583.9 332 100.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 5.2e-158 561.2 351 93.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-120 436.8 359 77.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.9e-116 422.5 371 74.1
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 9.3e-115 417.5 360 75.3
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.1e-70 269.2 301 59.1
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-62 244.2 348 53.7
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.1e-62 243.0 335 54.6
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.9e-44 183.0 274 51.8
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.1e-43 181.4 309 47.9
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.3e-39 167.9 266 48.1
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 6.8e-33 145.6 106 87.7
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.6e-32 143.7 474 34.8
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-30 137.9 467 31.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.2e-30 136.7 393 33.8
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.2e-30 136.3 416 35.6
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.2e-29 134.8 395 35.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 2.7e-29 133.7 474 31.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.7e-29 133.7 462 31.2
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.5e-29 133.3 490 29.8
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.5e-29 133.3 490 29.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 7.8e-29 132.1 468 30.3
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.7e-28 131.0 392 35.2
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.0e-28 130.2 414 34.3
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 4.3e-27 126.3 410 36.6
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.6e-27 125.9 488 29.1
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-26 124.8 463 30.7
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 6.2e-26 122.5 543 30.4
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 8.1e-26 122.1 354 35.0
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 3.1e-25 120.2 485 28.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.2e-24 118.2 481 29.3
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.2e-24 118.2 392 32.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.4e-24 116.7 413 34.1
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 3.4e-24 116.7 421 33.3
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.4e-24 116.3 427 34.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.4e-24 116.3 523 29.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.4e-24 116.3 397 32.7
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.8e-24 115.9 405 35.6
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 9.9e-24 115.2 525 28.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.2e-23 114.0 469 29.2
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.9e-23 113.6 322 37.0
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 8.4e-23 112.1 515 29.7
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.4e-23 112.1 390 32.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 7.1e-22 109.0 393 32.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 9.3e-22 108.6 374 32.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.6e-21 107.8 423 32.6
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.6e-21 106.3 392 36.0
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.6e-21 106.3 413 33.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 6.0e-21 105.9 417 29.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.8e-21 105.5 435 33.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.0e-20 105.1 201 40.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.7e-20 104.4 226 35.4
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.0e-20 103.6 215 40.0
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 5.1e-20 102.8 386 31.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.1e-19 101.7 221 39.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.9e-19 100.9 403 30.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.6e-19 99.4 395 30.4
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 5.6e-19 99.4 388 31.7
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 5.6e-19 99.4 388 31.7
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 9.6e-19 98.6 303 35.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.1e-18 97.4 407 33.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.1e-18 97.4 407 33.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.8e-18 97.1 391 30.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.8e-18 97.1 217 39.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.8e-18 97.1 217 39.2
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.6e-18 96.7 434 32.0
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.6e-18 96.7 303 35.0
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 4.8e-18 96.3 445 32.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.8e-18 96.3 169 42.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 4.8e-18 96.3 201 38.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.8e-18 96.3 214 37.9
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.8e-18 96.3 202 37.6
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.8e-18 96.3 217 39.2
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 8.1e-18 95.5 159 44.7
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 8.1e-18 95.5 154 43.5
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-17 94.7 271 37.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-17 94.7 217 37.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.8e-17 94.4 203 38.9
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.4e-17 94.0 297 31.3
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.4e-17 94.0 191 39.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.1e-17 93.6 433 32.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.1e-17 93.6 348 32.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 4.0e-17 93.2 233 35.6
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 4.0e-17 93.2 368 30.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.9e-17 92.4 484 28.5
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.9e-17 92.4 141 45.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 9.0e-17 92.0 432 32.6
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.0e-17 92.0 479 28.8
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.0e-17 92.0 416 33.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-16 91.7 211 35.1
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 2.0e-16 90.9 437 29.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.0e-16 90.9 153 41.8
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-16 90.9 151 42.4
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.6e-16 90.5 220 36.4
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.6e-16 90.5 222 35.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 4.5e-16 89.7 404 28.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 4.5e-16 89.7 201 38.8
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 7.6e-16 89.0 350 32.0
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 7.6e-16 89.0 491 28.9
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 9.9e-16 88.6 152 44.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 9.9e-16 88.6 434 29.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.7e-15 87.8 211 35.1
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.7e-15 87.8 208 38.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.2e-15 87.4 424 28.5
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.9e-15 87.0 233 37.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.9e-15 87.0 418 29.9
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 3.8e-15 86.7 124 46.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.8e-15 86.7 210 33.8
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.4e-15 85.9 450 28.2
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 6.4e-15 85.9 144 43.8
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 8.4e-15 85.5 350 31.1
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.1e-14 85.1 457 27.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.4e-14 84.7 139 43.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.9e-14 84.3 171 36.8
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.2e-14 83.6 465 29.5
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 5.4e-14 82.8 230 35.7
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 7.1e-14 82.4 218 39.4
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 9.3e-14 82.0 221 36.7
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 9.3e-14 82.0 261 34.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 9.3e-14 82.0 414 28.0
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.6e-13 81.3 407 29.0
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.6e-13 81.3 231 35.1
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-13 81.3 469 29.0
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.1e-13 80.9 379 31.7
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 2.7e-13 80.5 329 31.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.7e-13 80.5 521 26.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.6e-13 79.7 332 31.9
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.6e-13 79.7 402 28.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 6.0e-13 79.3 414 28.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.9e-13 79.0 430 26.7
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.0e-12 78.6 414 29.0
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.0e-12 78.6 406 27.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.3e-12 78.2 446 29.8
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.8e-12 77.8 392 28.6
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 3.0e-12 77.0 495 25.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 5.1e-12 76.3 220 35.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.7e-12 75.9 138 37.7
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-11 75.1 409 27.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.1e-11 75.1 431 26.7
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.9e-11 74.3 281 31.0
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.3e-11 73.2 367 28.9
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.6e-11 72.8 391 31.5
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.6e-11 72.8 209 37.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.3e-10 71.6 260 31.5
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.3e-10 71.6 241 34.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.3e-10 71.6 341 29.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.8e-10 69.7 243 34.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 8.1e-10 68.9 114 42.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.3e-09 66.2 90 44.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 5.3e-09 66.2 366 27.3
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 5.3e-09 66.2 371 27.8
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 6.9e-09 65.9 218 34.4
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 9.0e-09 65.5 372 26.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-08 64.7 87 50.6
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 3.4e-08 63.5 130 34.6
FAN22G0969 Fragaria x ananassa HOM05D017445 ORTHO05D018150 4.5e-08 63.2 328 28.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 7.6e-08 62.4 227 30.8
FAN12G2937 Fragaria x ananassa HOM05D017445 ORTHO05D018150 9.9e-08 62.0 328 28.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.9e-08 62.0 423 25.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.3e-07 61.6 431 27.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.2e-07 60.8 455 26.8
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.9e-07 60.5 253 32.8
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.9e-07 59.7 338 31.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.9e-07 59.7 340 30.6
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 6.4e-07 59.3 149 33.6
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.4e-06 58.2 251 28.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-06 57.8 172 34.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 5.5e-06 56.2 80 48.8


User provided reference genes

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