Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 8.4e-94 347.1 180 100.0
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.1e-93 346.7 180 99.4
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.9e-86 322.0 180 96.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 5.5e-85 317.8 181 91.7
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 5.5e-85 317.8 181 91.7
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.7e-84 315.5 180 93.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.5e-84 315.1 181 91.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.8e-81 305.4 180 88.9
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.8e-81 304.7 180 88.3
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 6.2e-81 304.3 181 88.4
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.1e-80 302.0 181 89.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 9.0e-80 300.4 180 87.2
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 8.4e-78 293.9 182 84.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 3.2e-77 292.0 177 86.4
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 3.2e-77 292.0 177 86.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 9.3e-77 290.4 182 85.7
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.8e-75 286.2 179 84.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.1e-68 262.7 181 80.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 5.7e-66 254.6 177 79.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 7.2e-61 237.7 176 73.9
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 9.4e-61 237.3 187 71.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-54 217.2 180 67.2
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-54 216.9 180 67.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.2e-53 212.2 177 68.4
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-53 211.5 179 65.9
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 9.4e-53 210.7 180 66.7
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 9.4e-53 210.7 180 67.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.6e-52 209.9 184 66.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.6e-52 209.9 184 66.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.1e-52 209.5 185 66.5
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.7e-52 209.1 186 64.5
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 4.7e-52 208.4 181 64.1
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.0e-51 207.2 180 65.6
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.8e-51 206.5 181 63.5
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-51 206.5 179 65.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-51 206.5 179 65.9
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.8e-51 206.5 178 66.3
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.3e-51 206.1 179 65.9
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 3.9e-51 205.3 186 62.9
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 3.9e-51 205.3 183 62.8
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 6.7e-51 204.5 178 66.3
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 6.7e-51 204.5 178 66.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.7e-51 204.5 180 63.9
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-50 203.8 201 59.7
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.5e-50 203.4 178 64.0
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.0e-50 203.0 185 62.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.6e-50 202.6 178 65.2
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.3e-50 202.2 180 61.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 5.7e-50 201.4 185 63.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 5.7e-50 201.4 178 62.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 7.4e-50 201.1 177 66.1
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 7.4e-50 201.1 179 64.8
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.3e-49 200.3 192 62.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.3e-49 200.3 178 65.2
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.7e-49 199.9 181 65.2
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.7e-49 199.9 178 64.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.2e-49 199.5 186 61.8
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 62.9
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.8e-49 199.1 188 61.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.8e-49 199.1 178 65.2
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.8e-49 199.1 186 61.8
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.7e-49 198.7 188 61.2
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 3.7e-49 198.7 187 62.0
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-49 198.0 180 62.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 6.3e-49 198.0 183 64.5
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 8.2e-49 197.6 180 65.6
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 8.2e-49 197.6 180 62.2
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.1e-48 197.2 179 62.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.4e-48 196.8 177 62.1
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.8e-48 196.4 177 63.3
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.4e-48 196.1 183 62.8
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.4e-48 196.1 178 61.8
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.4e-48 196.1 199 57.8
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.1e-48 195.7 173 65.3
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 5.3e-48 194.9 185 62.2
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-48 194.9 180 61.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.0e-48 194.5 177 63.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 9.1e-48 194.1 179 62.0
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 9.1e-48 194.1 198 61.1
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 178 62.4
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.2e-47 193.7 178 60.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.6e-47 193.4 178 62.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-47 193.4 183 62.3
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.0e-47 193.0 180 60.6
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.6e-47 192.6 178 64.0
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 2.6e-47 192.6 173 63.6
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.0e-46 190.7 191 58.1
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.3e-46 190.3 180 61.1
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.9e-46 189.1 202 56.4
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.8e-46 188.7 184 60.9
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.8e-46 188.7 176 61.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 8.5e-46 187.6 183 61.2
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.1e-45 187.2 189 57.1
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.1e-45 187.2 131 74.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.5e-45 186.8 176 60.2
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 5.5e-45 184.9 178 58.4
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 7.2e-45 184.5 176 60.8
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.4e-45 184.1 153 66.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 9.4e-45 184.1 181 58.6
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.6e-44 183.3 181 60.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.1e-44 181.4 180 61.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.4e-43 180.3 192 58.9
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.0e-43 179.1 181 56.9
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 5.2e-43 178.3 145 67.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-42 176.0 177 57.6
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 9.7e-42 174.1 176 52.8
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.7e-41 173.3 175 58.9
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-41 172.9 189 57.7
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 2.8e-41 172.6 190 55.8
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.7e-41 172.2 110 76.4
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.8e-40 169.9 181 55.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 7.0e-40 167.9 158 62.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 9.1e-40 167.5 181 56.9
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.1e-37 160.6 158 59.5
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.2e-37 158.7 139 65.5
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.6e-36 156.8 130 58.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.0e-35 152.5 194 47.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 2.6e-34 149.4 90 82.2
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.7e-33 146.7 189 47.6
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.7e-33 146.7 142 61.3
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 6.3e-33 144.8 141 61.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.8e-32 143.3 106 67.0
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.6e-28 130.2 108 61.1
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.8e-28 129.4 109 60.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.8e-28 129.4 123 62.6
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.3e-27 126.3 117 59.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.2e-27 125.2 121 56.2
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.5e-26 123.6 101 62.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 3.4e-26 122.5 101 61.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.4e-26 122.1 126 55.6
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.2e-25 119.8 96 67.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 8.3e-25 117.9 105 59.0
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.8e-24 116.7 104 58.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.6e-22 108.2 110 50.9
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 8.6e-22 107.8 104 55.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 9.5e-21 104.4 128 52.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-20 104.0 104 51.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.2e-20 104.0 175 41.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.6e-20 103.6 110 53.6
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.7e-20 102.1 102 60.8
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.7e-20 102.1 106 52.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.0e-19 99.0 82 57.3
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.5e-18 97.1 96 49.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 4.4e-18 95.5 99 50.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.7e-17 93.6 69 65.2
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.4e-16 89.7 64 73.4
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-15 87.4 67 68.7
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.0e-14 84.3 113 41.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.0e-14 84.3 81 55.6
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-14 83.6 136 44.9
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.3e-13 78.2 94 45.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 9.5e-13 77.8 139 35.3
AL1G34190 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 2.6e-10 69.7 122 43.4
AL8G34840 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 3.4e-10 69.3 122 43.4
AL1G23700 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 4.4e-10 68.9 73 58.9
AL855U10020 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 4.4e-10 68.9 73 58.9
BraA02t04844Z Brassica rapa HOM05D017491 ORTHO05D005185 7.5e-10 68.2 76 55.3
AL8G33300 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.1e-08 64.3 53 64.2
AL1G53010 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 2.0e-07 60.1 58 58.6
A06p45320 Brassica napus HOM05D004626 ORTHO05D005185 5.0e-06 55.5 76 51.3


User provided reference genes

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