Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 6227.5 3143 100.0
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 6205.6 3136 99.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 6041.5 3153 96.9
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 6041.1 3144 97.2
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 5479.1 3202 87.6
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 5464.4 3199 87.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 5417.0 3200 86.3
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 5410.5 3193 86.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 5381.2 3192 86.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 5244.9 3188 84.0
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 5063.0 3254 79.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 4467.5 3197 72.6
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3621.2 3234 59.9
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3612.4 3265 59.5
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3577.7 3227 59.4
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3562.7 3283 58.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3535.0 3231 58.6
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3534.2 3258 58.3
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3532.7 3242 58.5
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3530.7 3230 58.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3513.8 3240 58.9
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3512.2 3243 58.7
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3493.7 3291 58.0
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3491.4 3240 58.4
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3469.9 3225 58.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3467.9 3264 57.8
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3458.3 3259 57.5
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3453.7 3281 57.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3448.7 3261 57.4
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3427.5 3260 57.0
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3427.5 3259 57.1
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3425.6 3259 57.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3403.6 3257 57.4
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3395.1 3290 56.5
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3372.8 3200 57.0
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3341.2 3251 55.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3327.7 3227 56.2
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3325.0 3228 56.1
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3319.6 3255 56.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3316.2 3245 55.8
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3312.7 3225 56.2
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3305.0 3241 55.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3288.8 3235 55.5
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3288.0 3297 55.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3268.0 3224 55.6
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3264.9 3229 55.7
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3255.3 3270 55.8
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3215.6 3379 53.2
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3206.0 3223 54.9
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3186.0 3255 54.4
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3179.8 3266 54.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3172.1 3267 54.2
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3147.5 2892 58.4
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3141.3 3274 53.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3132.0 3273 53.3
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3120.1 3301 53.5
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3116.6 3273 53.1
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3111.6 3264 53.4
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3094.7 3182 53.8
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3093.9 3248 53.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3093.5 3229 53.5
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3089.7 3271 53.1
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3065.8 3245 52.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3063.9 3064 54.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3053.1 3226 53.4
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3049.6 3272 52.9
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3014.2 3250 51.8
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3012.6 3158 52.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2996.1 3262 51.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2862.4 3005 53.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2810.0 2703 56.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2741.1 2438 60.1
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2686.4 3073 50.7
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2663.6 3247 48.5
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2640.5 2988 50.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2612.8 3222 47.0
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2598.5 2021 67.1
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2372.0 3111 46.0
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2328.5 2451 52.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2127.1 2566 48.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2105.5 1602 69.2
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2073.5 1693 64.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2072.4 1991 57.1
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2029.2 3020 41.7
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1885.9 1506 66.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1882.8 1467 67.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1882.1 3356 37.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1868.6 2722 42.3
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1855.9 2401 45.6
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1814.3 2994 39.2
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1808.9 2428 44.3
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1780.4 1796 56.4
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1777.7 1443 66.0
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1725.3 2971 38.4
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1474.5 1005 75.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1397.1 2125 40.7
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1278.8 1247 55.8
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1216.4 1545 47.2
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1199.9 1726 41.5
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1188.7 1009 63.5
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1155.6 971 61.9
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1127.9 844 69.3
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 1.2e-309 1068.1 1514 42.4
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 1.4e-308 1064.7 833 66.9
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.4e-289 1000.7 950 58.5
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 3.2e-289 1000.3 3354 27.8
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.5e-286 991.5 1134 52.0
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.6e-285 986.9 853 61.5
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.8e-261 906.7 885 54.5
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 3.1e-260 904.0 1493 39.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 2.3e-239 834.7 1487 36.8
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.4e-222 777.3 752 55.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 5.6e-217 760.4 1269 38.8
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.0e-198 698.7 414 84.8
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.8e-195 686.8 441 78.5
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.7e-145 521.2 789 39.0
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 5.0e-141 508.1 800 39.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.9e-138 498.4 683 43.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 4.1e-127 461.8 900 34.4
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 6.5e-125 454.5 327 69.7
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-124 453.4 818 35.7
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.1e-119 435.6 448 51.1
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.3e-119 434.9 250 84.8
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.7e-117 429.9 270 78.9
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 9.8e-113 414.1 408 56.4
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.8e-111 409.8 530 47.7
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 2.3e-101 376.3 302 66.9
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 2.9e-101 375.9 787 32.1
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 3.4e-97 362.5 570 42.1
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 3.5e-94 352.4 793 31.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.4e-90 340.5 217 79.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 4.0e-90 339.0 244 68.4
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 8.9e-90 337.8 247 64.8
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.2e-89 337.4 817 32.6
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 4.9e-88 332.0 839 30.3
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 6.4e-88 331.6 457 40.7
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-87 330.9 337 56.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 5.6e-84 318.5 419 44.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.2e-81 310.8 307 54.7
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-80 307.4 354 49.2
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.9e-80 305.4 818 29.8
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-74 287.3 326 50.0
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.8e-74 287.0 613 33.4
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 4.1e-71 275.8 728 30.1
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.2e-70 274.2 666 29.3
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 7.8e-70 271.6 292 51.4
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.8e-64 252.7 960 25.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 9.3e-63 248.1 329 43.5
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 3.4e-57 229.6 155 72.3
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.6e-46 194.1 390 34.4
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 4.0e-42 179.5 737 25.6
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-41 176.4 213 49.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-32 147.5 118 65.3
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.3e-27 131.3 96 66.7
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.1e-26 126.3 82 73.2
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.0e-21 111.7 124 47.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 8.8e-21 108.6 125 51.2
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-20 108.2 135 49.6
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 2.0e-20 107.5 85 62.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.7e-19 104.4 133 50.4
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-19 104.0 109 52.3
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.8e-19 103.6 111 48.6
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 3.7e-19 103.2 69 73.9
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.1e-12 81.6 93 44.1
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.6e-12 80.5 133 34.6
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.6e-12 80.5 60 60.0
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.4e-10 73.9 63 55.6
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.6e-09 71.2 60 56.7
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.6e-09 70.5 50 72.0
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-07 64.3 45 71.1


User provided reference genes

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