Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p00240 Brassica napus HOM05D004721 ORTHO05D005765 3.3e-83 311.6 154 100.0
BraA01t00031Z Brassica rapa HOM05D004721 ORTHO05D005765 3.3e-83 311.6 154 100.0
CARHR247630 Cardamine hirsuta HOM05D004721 ORTHO05D005765 3.1e-73 278.5 147 93.9
BraA08t34333Z Brassica rapa HOM05D004721 ORTHO05D005765 4.5e-72 274.6 147 92.5
Thhalv10025644m.g Eutrema salsugineum HOM05D004721 ORTHO05D005765 5.9e-72 274.2 147 91.8
Sp7g36700 Schrenkiella parvula HOM05D004721 ORTHO05D005765 6.5e-71 270.8 147 91.2
BcaB03g12244 Brassica carinata HOM05D004721 ORTHO05D005765 2.5e-70 268.9 147 91.2
A08p23810 Brassica napus HOM05D004721 ORTHO05D005765 5.5e-70 267.7 147 90.5
AT4G39120 Arabidopsis thaliana HOM05D004721 ORTHO05D005765 7.2e-70 267.3 147 89.1
BcaC01g00283 Brassica carinata HOM05D004721 ORTHO05D005765 7.2e-70 267.3 147 90.5
C03p77610 Brassica napus HOM05D004721 ORTHO05D005765 7.2e-70 267.3 147 90.5
BolC3t20019H Brassica oleracea HOM05D004721 ORTHO05D005765 7.2e-70 267.3 147 90.5
Carub.0007s0100 Capsella rubella HOM05D004721 ORTHO05D005765 7.2e-70 267.3 147 88.4
AL7G11060 Arabidopsis lyrata HOM05D004721 ORTHO05D005765 2.3e-68 262.3 147 87.1
Aa31LG6G16140 Aethionema arabicum HOM05D004721 ORTHO05D005765 2.2e-66 255.8 147 85.0
THA.LOC104807751 Tarenaya hassleriana HOM05D004721 ORTHO05D005765 1.6e-64 249.6 147 82.3
Aqoxy6G01195 Aquilegia oxysepala HOM05D004721 ORTHO05D005765 1.6e-61 239.6 147 77.6
QL11p045210 Quercus lobata HOM05D004721 ORTHO05D005765 6.1e-61 237.7 146 76.0
HanXRQChr03g0069331 Helianthus annuus HOM05D004721 ORTHO05D005765 8.0e-61 237.3 147 76.2
TAR628G0683 Trochodendron aralioides HOM05D004721 ORTHO05D005765 8.0e-61 237.3 147 76.9
CSS0047334 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.4e-60 236.5 147 75.5
Dinv23488 Davidia involucrata HOM05D004721 ORTHO05D005765 1.4e-60 236.5 147 76.2
TWI31G1285 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.4e-60 236.5 145 76.6
GSVIVG01023826001 Vitis vinifera HOM05D004721 ORTHO05D005765 1.8e-60 236.1 147 75.5
Gorai.005G246000 Gossypium raimondii HOM05D004721 ORTHO05D005765 2.3e-60 235.7 147 75.5
RcHm_v2.0_Chr6g0265981 Rosa chinensis HOM05D004721 ORTHO05D005765 2.3e-60 235.7 147 74.8
ClCG11G004130 Citrullus lanatus HOM05D004721 ORTHO05D005765 3.0e-60 235.3 145 74.5
Gohir.A03G196800 Gossypium hirsutum HOM05D004721 ORTHO05D005765 3.0e-60 235.3 147 74.8
Manes.04G087050 Manihot esculenta HOM05D004721 ORTHO05D005765 3.0e-60 235.3 147 77.6
ECA240G1659 Erigeron canadensis HOM05D004721 ORTHO05D005765 4.0e-60 235.0 147 75.5
Psat5g005400 Pisum sativum HOM05D004721 ORTHO05D005765 4.0e-60 235.0 145 74.5
Prupe.8G090900 Prunus persica HOM05D004721 ORTHO05D005765 4.0e-60 235.0 147 74.8
CSS0049052 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 5.2e-60 234.6 147 74.8
Nn5g29707 Nelumbo nucifera HOM05D004721 ORTHO05D005765 5.2e-60 234.6 147 76.2
TAR628G0727 Trochodendron aralioides HOM05D004721 ORTHO05D005765 5.2e-60 234.6 147 75.5
Cfa005049 Carpinus fangiana HOM05D004721 ORTHO05D005765 6.8e-60 234.2 145 75.2
Glyma.04G009800 Glycine max HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 74.1
Gohir.D02G218100 Gossypium hirsutum HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 75.5
Peaxi162Scf00016g00435 Petunia axillaris HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 75.5
Potri.009G120600 Populus trichocarpa HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 76.2
Sabra09G0092900 Salix brachista HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 76.2
TWI75G0248 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 76.9
VMungo1309G2240 Vigna mungo HOM05D004721 ORTHO05D005765 6.8e-60 234.2 147 75.5
Migut.B00208 Erythranthe guttata HOM05D004721 ORTHO05D005765 8.9e-60 233.8 147 75.5
Phvul.009G005100 Phaseolus vulgaris HOM05D004721 ORTHO05D005765 8.9e-60 233.8 147 74.8
TPR.G32188 Trifolium pratense HOM05D004721 ORTHO05D005765 1.2e-59 233.4 145 73.8
CiPaw.06G132800 Carya illinoinensis HOM05D004721 ORTHO05D005765 1.5e-59 233.0 147 74.8
Ciclev10028779m.g Citrus clementina HOM05D004721 ORTHO05D005765 1.5e-59 233.0 147 75.5
FvH4_2g09630 Fragaria vesca HOM05D004721 ORTHO05D005765 1.5e-59 233.0 147 74.1
MBI10_g00756_MAGBIO Magnolia biondii HOM05D004721 ORTHO05D005765 1.5e-59 233.0 147 75.5
Atru.chr5.3082 Acer truncatum HOM05D004721 ORTHO05D005765 2.6e-59 232.3 147 74.8
Actinidia00549 Actinidia chinensis HOM05D004721 ORTHO05D005765 3.4e-59 231.9 147 74.1
MD05G1061200 Malus domestica HOM05D004721 ORTHO05D005765 4.4e-59 231.5 147 73.5
Nn5g28946 Nelumbo nucifera HOM05D004721 ORTHO05D005765 4.4e-59 231.5 147 75.5
Cpa.g.sc106.2 Carica papaya HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 75.5
CsaV3_2G015040 Cucumis sativus L. HOM05D004721 ORTHO05D005765 5.7e-59 231.1 145 73.1
Eucgr.G01697 Eucalyptus grandis HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 72.1
FAN15G0894 Fragaria x ananassa HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 73.5
Lj9A377G93 Lonicera japonica HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 74.8
Lj1g0012947 Lotus japonicus HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 72.8
PSO339G6113 Papaver somniferum HOM05D004721 ORTHO05D005765 5.7e-59 231.1 147 73.5
MELO3C023324.2 Cucumis melo HOM05D004721 ORTHO05D005765 7.5e-59 230.7 145 72.4
Duzib052G1174 Durio zibethinus HOM05D004721 ORTHO05D005765 7.5e-59 230.7 147 73.5
FAN24G2181 Fragaria x ananassa HOM05D004721 ORTHO05D005765 7.5e-59 230.7 147 73.5
Lalb_Chr08g0246691 Lupinus albus HOM05D004721 ORTHO05D005765 7.5e-59 230.7 147 72.1
Oeu020727.1 Olea europaea HOM05D004721 ORTHO05D005765 9.8e-59 230.3 145 74.5
Lj5A193T104 Lonicera japonica HOM05D004721 ORTHO05D005765 1.7e-58 229.6 146 73.3
Sed0009940 Sechium edule HOM05D004721 ORTHO05D005765 1.7e-58 229.6 145 73.8
Thecc.02G080400 Theobroma cacao HOM05D004721 ORTHO05D005765 1.7e-58 229.6 147 73.5
PGSC0003DMG400030950 Solanum tuberosum HOM05D004721 ORTHO05D005765 2.2e-58 229.2 147 73.5
Solyc01g109930.4 Solanum lycopersicum HOM05D004721 ORTHO05D005765 2.9e-58 228.8 147 72.1
Sopen01g052120 Solanum pennellii HOM05D004721 ORTHO05D005765 2.9e-58 228.8 147 72.1
Haze_02333 Corylus avellana HOM05D004721 ORTHO05D005765 3.7e-58 228.4 155 71.6
SalBow6G3984 Salvia bowleyana HOM05D004721 ORTHO05D005765 4.9e-58 228.0 147 73.5
Glyma.06G009800 Glycine max HOM05D004721 ORTHO05D005765 8.3e-58 227.3 148 73.0
Sc08g0000660 Simmondsia chinensis HOM05D004721 ORTHO05D005765 8.3e-58 227.3 146 74.0
CANSAT11G2513 Cannabis sativa HOM05D004721 ORTHO05D005765 1.1e-57 226.9 147 72.1
AUR62011286 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.4e-57 226.5 147 73.5
MD10G1068900 Malus domestica HOM05D004721 ORTHO05D005765 1.4e-57 226.5 147 71.4
arahy.Tifrunner.gnm1.ann1.0UP1AG Arachis hypogaea HOM05D004721 ORTHO05D005765 1.8e-57 226.1 147 72.1
arahy.Tifrunner.gnm1.ann1.IE0TZZ Arachis hypogaea HOM05D004721 ORTHO05D005765 1.8e-57 226.1 147 72.1
Cc02_g17240 Coffea canephora HOM05D004721 ORTHO05D005765 1.8e-57 226.1 145 71.7
Rhsim11G0180400 Rhododendron simsii HOM05D004721 ORTHO05D005765 2.4e-57 225.7 147 71.4
EL10Ac9g21691 Beta vulgaris HOM05D004721 ORTHO05D005765 3.2e-57 225.3 147 72.8
arahy.Tifrunner.gnm1.ann1.P63ZP0 Arachis hypogaea HOM05D004721 ORTHO05D005765 4.1e-57 224.9 147 71.4
Ah.01g019120 Amaranthus hybridus HOM05D004721 ORTHO05D005765 5.4e-57 224.6 147 72.8
arahy.Tifrunner.gnm1.ann1.VA1NMQ Arachis hypogaea HOM05D004721 ORTHO05D005765 5.4e-57 224.6 147 71.4
Nitab4.5_0005796g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.4e-57 224.6 147 72.1
Oeu046144.1 Olea europaea HOM05D004721 ORTHO05D005765 5.4e-57 224.6 144 73.6
SGA_v2.0_scaffold32G13194 Striga asiatica HOM05D004721 ORTHO05D005765 9.2e-57 223.8 147 72.1
CAN.G1544.7 Capsicum annuum HOM05D004721 ORTHO05D005765 1.2e-56 223.4 147 71.4
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 2.7e-56 222.2 147 70.7
Lsat_1_v5_gn_9_107961 Lactuca sativa HOM05D004721 ORTHO05D005765 3.5e-56 221.9 140 75.7
vmacro02078 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 7.8e-56 220.7 147 71.4
Os07g0191000 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 1.7e-55 219.5 147 68.7
Hund00240 Selenicereus undatus HOM05D004721 ORTHO05D005765 1.7e-55 219.5 147 72.8
Zm00001eb333360 Zea mays HOM05D004721 ORTHO05D005765 3.9e-55 218.4 147 67.3
ATR1158G041 Amborella trichopoda HOM05D004721 ORTHO05D005765 5.0e-55 218.0 147 70.1
CDE07G1572 Ceratophyllum demersum HOM05D004721 ORTHO05D005765 7.3e-54 214.2 147 68.7
unitig_37.g12822 Utricularia gibba HOM05D004721 ORTHO05D005765 3.6e-53 211.8 147 67.3
Medtr3g117220 Medicago truncatula HOM05D004721 ORTHO05D005765 4.1e-49 198.4 130 71.5
AagrBONN_evm.TU.Sc2ySwM_117.356 Anthoceros agrestis HOM05D004721 ORTHO05D005765 3.5e-48 195.3 150 60.7
SMO356G0699 Selaginella moellendorffii HOM05D004721 ORTHO05D005765 1.0e-47 193.7 146 62.3
DCAR_023012 Daucus carota HOM05D004721 ORTHO05D005765 1.9e-46 189.5 122 73.8
Dinv42038 Davidia involucrata HOM05D004721 ORTHO05D005765 4.3e-46 188.3 147 63.3
Mapoly0009s0236 Marchantia polymorpha HOM05D004721 ORTHO05D005765 1.2e-45 186.8 149 62.4
SHI05562 Sapria himalayana HOM05D004721 ORTHO05D005765 1.1e-44 183.7 134 63.4
Pp3c14_5280 Physcomitrium patens HOM05D004721 ORTHO05D005765 7.5e-43 177.6 143 57.3
Cfa005051 Carpinus fangiana HOM05D004721 ORTHO05D005765 3.7e-42 175.3 120 69.2
Pp3c11_19670 Physcomitrium patens HOM05D004721 ORTHO05D005765 8.3e-42 174.1 144 58.3
Cre17.g723550 Chlamydomonas reinhardtii HOM05D004721 ORTHO05D005765 4.1e-41 171.8 150 52.0
Pp3c7_6620 Physcomitrium patens HOM05D004721 ORTHO05D005765 7.1e-41 171.0 144 56.9
AUR62016772 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.2e-40 170.2 147 58.5
DCAR_030585 Daucus carota HOM05D004721 ORTHO05D005765 2.5e-38 162.5 145 53.8
vmacro17459 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 7.3e-38 161.0 220 42.3
Nitab4.5_0003234g0080 Nicotiana tabacum HOM05D004721 ORTHO05D005765 9.5e-38 160.6 147 55.8
PRCOL_00005559 Prasinoderma coloniale HOM05D004721 ORTHO05D005765 9.5e-38 160.6 147 50.3
MCO05G057 Micromonas commoda HOM05D004721 ORTHO05D005765 8.1e-37 157.5 147 49.0
CBR_g50245 Chara braunii HOM05D004721 ORTHO05D005765 2.2e-34 149.4 114 60.5
EL10Ac4g09012 Beta vulgaris HOM05D004721 ORTHO05D005765 4.1e-33 145.2 177 42.4
PGR042G3536 Punica granatum HOM05D004721 ORTHO05D005765 7.8e-32 141.0 85 80.0
TWI77G0152 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.9e-31 138.7 146 47.3
TWI77G0224 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.9e-31 138.7 146 47.3
TWI77G0506 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.9e-31 138.7 146 47.3
TWI77G0992 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 3.9e-31 138.7 146 47.3
CSS0042553 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.5e-30 136.7 147 50.3
TWI34G1838 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.5e-30 136.7 140 46.4
C01p00350 Brassica napus HOM05D004721 ORTHO05D005765 3.3e-30 135.6 125 60.8
BolC1t00041H Brassica oleracea HOM05D004721 ORTHO05D005765 3.3e-30 135.6 125 60.8
AUR62024760 Chenopodium quinoa HOM05D004721 ORTHO05D005765 2.1e-29 132.9 134 45.5
Actinidia33624 Actinidia chinensis HOM05D004721 ORTHO05D005765 8.9e-28 127.5 95 63.2
Nitab4.5_0005441g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.8e-27 124.8 143 41.3
Nitab4.5_0015623g0010 Nicotiana tabacum HOM05D004721 ORTHO05D005765 8.4e-26 120.9 143 40.6
Peaxi162Scf01112g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 2.7e-24 115.9 144 41.0
Peaxi162Scf01049g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 1.0e-23 114.0 144 37.5
Nitab4.5_0000632g0120 Nicotiana tabacum HOM05D004721 ORTHO05D005765 3.3e-22 109.0 143 37.8
Haze_27473 Corylus avellana HOM05D004721 ORTHO05D005765 2.4e-20 102.8 147 40.8
AUR62038677 Chenopodium quinoa HOM05D004721 ORTHO05D005765 4.0e-20 102.1 101 49.5
AUR62040957 Chenopodium quinoa HOM05D004721 ORTHO05D005765 5.3e-20 101.7 88 53.4
Nitab4.5_0003611g0070 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.2e-19 100.5 139 38.1
Sopen01g041380 Solanum pennellii HOM05D004721 ORTHO05D005765 5.8e-19 98.2 125 40.0
Nitab4.5_0002361g0020 Nicotiana tabacum HOM05D004721 ORTHO05D005765 7.6e-19 97.8 102 42.2
Cc02_g17250 Coffea canephora HOM05D004721 ORTHO05D005765 7.1e-17 91.3 57 73.7
Cfa005052 Carpinus fangiana HOM05D004721 ORTHO05D005765 1.2e-16 90.5 65 69.2
PGSC0003DMG400022510 Solanum tuberosum HOM05D004721 ORTHO05D005765 1.7e-15 86.7 116 37.1
Ca_28938_v3 Cicer arietinum L. HOM05D004721 ORTHO05D005765 1.4e-12 77.0 89 42.7
Nn1g05957 Nelumbo nucifera HOM05D004721 ORTHO05D005765 2.3e-07 59.7 47 59.6
AUR62037690 Chenopodium quinoa HOM05D000031 ORTHO05D001033 3.9e-07 58.9 50 52.0
SGA_v2.0_scaffold58G20501 Striga asiatica HOM05D004721 ORTHO05D403533 9.6e-06 54.3 90 42.2


User provided reference genes

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