Step 1:

OPTION 1: one or more query genes

  • Paste a list of AGI codes in the text area on the left
  • The AGI codes may be seperated by tabs, spaces, semicolon, commas and newlines
  • The AGI codes are case insensitive
  • e.g.
    at1G01010;AT1G01030;at1g01040
    AT3G48750
    at5g61850;at1g77950

Step 3:

Show:

Pairwise interactions
Interactions of query protein(s) with neighbours
     Interactions between neighbours

Output:

Cytoscape (starts automatically ?)
Text

Step 2:

Select protein-protein interactions database(s):?

IntAct : experimental predicted both
TAIR : experimental predicted both
BAR : experimental predicted both
ArathReactome : experimental predicted both
AtPID : experimental predicted both
BioGRID : experimental predicted both
DIP : experimental predicted both
MINT : experimental predicted both
BIND : experimental predicted both
DeBodt (predicted - low stringency) : experimental predicted both
DeBodt (filtered - high stringency) : experimental predicted both
Ath Interactome Mapping Consortium : experimental predicted both
AraNet (gene-gene associations) : experimental predicted both
MIND0.5 (no independent verification) : experimental predicted both
G-protein interactome : experimental predicted both
EVEX binding : experimental predicted both
Please allow pop-ups. Also add co-expression analysis or regulatory interactions to the network localization of genes