PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: VV02G07030
Organism: Vitis vinifera

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G12760	Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).	1	+	View
AT1G63170	Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0; Bacteria - 6; Metazoa - 2543; Fungi - 730; Plants - 5047; Viruses - 25; Other Eukaryotes - 1196 (source: NCBI BLink). Zinc finger, C3HC4 type (RING finger) family protein	1	+	View
AT4G11680	Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	4	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD3G51530	No description available.	Bd3	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA11G22340	CC_gene:Znrf3,CC_gene:Rlim,CC_gene:RLIM,CC_gene:SIS3,CC_gene:RIE1,CC_gene:At4g11680,CC_gene:At1g63170,CC_gene:At1g12760,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	+	View
MA01G08180	CC_gene:Rnf150,CC_gene:RNF150,CC_gene:ZNRF3,CC_gene:Znrf3,CC_gene:RIE1,CC_gene:At1g63170,CC_gene:At4g11680,CC_gene:At1g12760,CC_functional_completeness:complete,PRODUCT:E3 ubiquitin-protein ligase At1g12760,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr1	-	View
MA05G20590	CC_gene:rnf12-b,CC_gene:RLIM,CC_gene:Rlim,CC_gene:Znrf3,CC_gene:RIE1,CC_gene:At1g63170,CC_gene:At1g12760,CC_gene:At4g11680,CC_functional_completeness:complete,PRODUCT:E3 ubiquitin-protein ligase At4g11680,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	-	View
MA11G03350	CC_gene:ZNRF3,CC_gene:RLIM,CC_gene:Rlim,CC_gene:Znrf3,CC_gene:RIE1,CC_gene:At1g63170,CC_gene:At1g12760,CC_gene:At4g11680,CC_functional_completeness:complete,PRODUCT:E3 ubiquitin-protein ligase At4g11680,GO:0008270,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS04G48050	RING zinc finger protein, putative, expressed	4	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_04G40250	No description available.	Chr04	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT03G12330	No description available.	Chr03	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI007G20890	No description available.	scaffold_7	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM10G22120	LOC100284185	10	+	View