Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL08G005050Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE)%3B contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLHch08-View
SL08G008600BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI)%3B contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-bindingch08+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G17880Basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT5G46760.1); Has 4061 Blast hits to 3773 proteins in 423 species: Archae - 0; Bacteria - 20; Metazoa - 552; Fungi - 119; Plants - 3303; Viruses - 13; Other Eukaryotes - 54 (source: NCBI BLink). Basic helix-loop-helix (bHLH) DNA-binding family protein MYC4 is a JAZ-interacting transcription factor that act together with MYC2 and MYC3 to activate JA-responses.4-View
AT5G46760MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses. Basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Basic helix-loop-helix (bHLH) DNA-binding family protein5+View
AT1G32640Basic helix-loop-helix (bHLH) DNA-binding family protein MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink). Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif and interacts with Jasmonate ZIM-domain proteins. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light?mediated photomorphogenic growth and blue and far-red-light?regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G34200No description available.Bd3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS10G42430transcription factor MYC7E, putative, expressed10+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_10G32690No description available.Chr10+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G09220No description available.Chr03-View
PT01G14220No description available.Chr01+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G028230No description available.chr_1-View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G32080No description available.scaffold_9-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G22080Transcription factor MYC7E Fragment1-View
ZM01G51370No description available.1-View


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Description
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Strand